Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1649
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              26   0.31 
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    26   0.31 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.2  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   6.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.8  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 94  SAVRPSIRTTVGFNEEC 144
           S V+PS+ +T GF++EC
Sbjct: 75  SQVQPSVASTTGFSKEC 91


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 94  SAVRPSIRTTVGFNEEC 144
           S V+PS+ +T GF++EC
Sbjct: 75  SQVQPSVASTTGFSKEC 91


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = +3

Query: 87  SVVCCTPFHSHHRRLQRRMLCSTTLDAERTGPNFGLGHSPHVHGPVP 227
           S +  TP H H          ST L          +GH+PH H   P
Sbjct: 424 SHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPP 470


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 589 LAGRAKGGRMSAGVCV 636
           LA R KGG    GVC+
Sbjct: 86  LAQRRKGGSCRNGVCI 101


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 62  SIDKYPHDRNRLQRRT 15
           S+DK+P+ R R Q RT
Sbjct: 386 SVDKHPNRRARGQLRT 401


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 432 CNKVEWVDNVVRLDNWLNFQ 491
           C ++ W  NV  L  W N Q
Sbjct: 332 CVQIPWDKNVEALAKWANGQ 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,199
Number of Sequences: 438
Number of extensions: 3938
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)