Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1649
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g58060.1 68414.m06580 helicase domain-containing protein cont... 47 1e-05
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 40 0.002
At5g04895.1 68418.m00514 helicase domain-containing protein simi... 36 0.027
At2g01130.1 68415.m00021 helicase domain-containing protein simi... 36 0.035
At1g48650.1 68414.m05445 helicase domain-containing protein cont... 35 0.062
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 34 0.082
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 29 2.3
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 29 2.3
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 29 2.3
At1g51530.1 68414.m05800 RNA recognition motif (RRM)-containing ... 29 3.1
At1g60620.1 68414.m06824 DNA-directed RNA polymerase, putative i... 28 7.1
At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05... 27 9.4
>At1g58060.1 68414.m06580 helicase domain-containing protein contains
similarity to SP|P24785 Dosage compensation regulator
(Male-less protein) (No action potential protein)
{Drosophila melanogaster}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 1459
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +3
Query: 288 IHKTSVNCSNMEQKFPSPLFVFGEKVRTRAISCKQTTMVAPIHLLLFGCN-KVEWVDNVV 464
IH +S+N SN + F +P VF EKV T + + TT+V+P +LLFG + V V
Sbjct: 1339 IHPSSIN-SNFKA-FQNPFLVFLEKVETNKVYLRDTTIVSPFSILLFGGSINVHHQSGSV 1396
Query: 465 RLDNWL 482
+D WL
Sbjct: 1397 TIDGWL 1402
>At1g58050.1 68414.m06579 helicase domain-containing protein contains
similarity to SP|P24785 Dosage compensation regulator
(Male-less protein) (No action potential protein)
{Drosophila melanogaster}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 1417
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +3
Query: 288 IHKTSVNCSNMEQKFPSPLFVFGEKVRTRAISCKQ-TTMVAPIHLLLFGCN-KVEWVDNV 461
IH+ S+N N + F P VF EK+ T+ + Q TT+V+P +LLFG + V
Sbjct: 1296 IHRNSIN-KNCKA-FQYPFIVFLEKLETKKVVYLQDTTVVSPFSILLFGGSINVHHQSGS 1353
Query: 462 VRLDNWL 482
V +D WL
Sbjct: 1354 VTIDGWL 1360
>At5g04895.1 68418.m00514 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579;contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain, PF00035: Double-stranded RNA binding
motif
Length = 581
Score = 35.9 bits (79), Expect = 0.027
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +3
Query: 294 KTSVNCSNMEQKFPS---PLFVFGEKVRTRAISCKQTTMVAPIHLLLFG--CNKVEWVDN 458
+ S+ +++ +FP+ P VFGEKV+ A+ + +T V L+LFG + V +
Sbjct: 330 QVSLYANSVNSRFPTIPYPWLVFGEKVKVNAVLIRDSTGVPDSSLILFGGSLSTGVQVGH 389
Query: 459 VVRLDNWLNFQM 494
+ LD +++F M
Sbjct: 390 LKMLDGYIDFFM 401
>At2g01130.1 68415.m00021 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 1112
Score = 35.5 bits (78), Expect = 0.035
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +3
Query: 246 REEKVLTTEGKPALIHKTSVNCSNMEQKFPSPLFVFGEKVRTRAISCKQTTMVAPIHLLL 425
R + T E L++ S N E K P P VF EK++ ++ + +T + L+L
Sbjct: 855 RSFSLKTMEDGQVLLYSNSENAR--ETKIPYPWLVFNEKIKVNSVFLRDSTACSDSTLIL 912
Query: 426 FG--CNKVEWVDNVVRLDNWLNFQM 494
FG +K + ++ L +L F M
Sbjct: 913 FGGSISKGDTDGHLKMLGGYLEFFM 937
>At1g48650.1 68414.m05445 helicase domain-containing protein contains
similarity to DEIH-box RNA/DNA helicase [Arabidopsis
thaliana] GI:5881579; contains Pfam profiles PF04408:
Helicase associated domain (HA2), PF00271: Helicase
conserved C-terminal domain, PF00035: Double-stranded RNA
binding motif
Length = 1197
Score = 34.7 bits (76), Expect = 0.062
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +3
Query: 264 TTEGKPALIHKTSVNCSNMEQKFPSPLFVFGEKVRTRAISCKQTTMVAPIHLLLFG 431
T E L++ +SVN N+ P P VF +KV+ ++ + +T V+ LLLFG
Sbjct: 942 TMEDGQVLLYSSSVN-GNVPM-IPFPWLVFNDKVKVNSVFLRDSTAVSDSVLLLFG 995
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 34.3 bits (75), Expect = 0.082
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 288 IHKTSVNCSNMEQKFPSPLFVFGEKVRTRAISCKQTTMVAPIHLLLFGCNKV--EWVDNV 461
IH SVN F P V+ EKV+T ++ + +T ++ LL+FG N + + + +
Sbjct: 877 IHPGSVNAR--VNLFSLPYLVYSEKVKTTSVYIRDSTNISDYALLMFGGNLIPSKTGEGI 934
Query: 462 VRLDNWLNF 488
L +L+F
Sbjct: 935 EMLGGYLHF 943
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/80 (25%), Positives = 31/80 (38%)
Frame = +2
Query: 359 EGAHPGHQLQADHHGRSHTSAALRL*QSGMGGQRGAAGQLAELPDVAAIGALIIALRPAI 538
+G PG Q Q H+ ++ + + + G G G L G + PAI
Sbjct: 322 DGPKPGKQQQHHHNPHAYNNPRYQRNDNNGYGPPGGHGHLMAGNPAGMGGPTAQVINPAI 381
Query: 539 ERIVERAAAQPDAALQFSPA 598
+ + A A L F+PA
Sbjct: 382 GQALTALLASQGAGLAFNPA 401
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/80 (25%), Positives = 31/80 (38%)
Frame = +2
Query: 359 EGAHPGHQLQADHHGRSHTSAALRL*QSGMGGQRGAAGQLAELPDVAAIGALIIALRPAI 538
+G PG Q Q H+ ++ + + + G G G L G + PAI
Sbjct: 322 DGPKPGKQQQHHHNPHAYNNPRYQRNDNNGYGPPGGHGHLMAGNPAGMGGPTAQVINPAI 381
Query: 539 ERIVERAAAQPDAALQFSPA 598
+ + A A L F+PA
Sbjct: 382 GQALTALLASQGAGLAFNPA 401
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/80 (25%), Positives = 31/80 (38%)
Frame = +2
Query: 359 EGAHPGHQLQADHHGRSHTSAALRL*QSGMGGQRGAAGQLAELPDVAAIGALIIALRPAI 538
+G PG Q Q H+ ++ + + + G G G L G + PAI
Sbjct: 322 DGPKPGKQQQHHHNPHAYNNPRYQRNDNNGYGPPGGHGHLMAGNPAGMGGPTAQVINPAI 381
Query: 539 ERIVERAAAQPDAALQFSPA 598
+ + A A L F+PA
Sbjct: 382 GQALTALLASQGAGLAFNPA 401
>At1g51530.1 68414.m05800 RNA recognition motif (RRM)-containing
protein
Length = 391
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 180 PNFGLGHSPHVHGPVP*RLSTHREEKVLTTEGKP 281
P GL P V GP R+S +++++++ T G P
Sbjct: 110 PPGGLALPPSVFGPPSERISPNQQQRMIATHGSP 143
>At1g60620.1 68414.m06824 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514324; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 385
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 357 EKVRTRAISCKQTTMVAPIHLLLFGCNKVEWVDNVVRLDNW 479
E RTR + CK+ + + P + G VDN VRL+N+
Sbjct: 38 ELQRTRVV-CKKDSNIHPTAITFSGAYSSMGVDNSVRLENF 77
>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam
PF05794: T-complex protein 11
Length = 1131
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 592 RELQRRVGLGRRALHDPLDGGPQRYD 515
+EL+R +G+GR A+ P GP +D
Sbjct: 823 QELKREIGIGRIAIMKPFLQGPAGFD 848
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,541,990
Number of Sequences: 28952
Number of extensions: 312266
Number of successful extensions: 891
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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