Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1648
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8EW56 Cluster: ABC transporter ATP-binding protein; n=...    36   0.96 
UniRef50_UPI00006CFC26 Cluster: hypothetical protein TTHERM_0053...    33   6.7  
UniRef50_Q2RHE6 Cluster: Sigma-24; n=1; Moorella thermoacetica A...    33   6.7  

>UniRef50_Q8EW56 Cluster: ABC transporter ATP-binding protein; n=1;
           Mycoplasma penetrans|Rep: ABC transporter ATP-binding
           protein - Mycoplasma penetrans
          Length = 443

 Score = 35.9 bits (79), Expect = 0.96
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -2

Query: 336 MIEYKTSILSEKSPI*HFT*--NYYSRKLDIKNDIKVTKKANEYTLKMLNNRLSNYTPNN 163
           ++E KT ++S   PI H T   N    K +  N    T  AN    +  N   +N +PNN
Sbjct: 333 VVEQKTQVVSAAKPIQHSTPTVNVLPNKANTTNSF--TNPANVVATEKTNTLKTNPSPNN 390

Query: 162 SGPTKTTE 139
           + PTK  E
Sbjct: 391 AQPTKENE 398


>UniRef50_UPI00006CFC26 Cluster: hypothetical protein
           TTHERM_00530430; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00530430 - Tetrahymena
           thermophila SB210
          Length = 277

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
 Frame = -2

Query: 276 NYYSRKLDIKN-DIKVTKKANEYTL-KMLNNRLSNYTPNNSGPTKTTELIQF*FDVSRSS 103
           NYY  ++  +N  I+   K N+  + ++L  + S+  P    P K ++ IQ+  ++S+ +
Sbjct: 53  NYYRTRIHEENIKIQDMNKKNDLIMQRLLKIQNSSTQPQVYSPKKRSQSIQYSSEISKKN 112

Query: 102 LESCLRYDINS*IRVVRGSKPKHSRL 25
            E+ L+      + + R +   HSRL
Sbjct: 113 TENLLKNRYRQQLDIQRENVAIHSRL 138


>UniRef50_Q2RHE6 Cluster: Sigma-24; n=1; Moorella thermoacetica ATCC
           39073|Rep: Sigma-24 - Moorella thermoacetica (strain
           ATCC 39073)
          Length = 204

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 363 DSGDTENSAINRKFVKKTGFKYQLYFATYQLHIIRSVCQ 479
           D+GD    A+ R F     F+ Q  F T+  HII +VC+
Sbjct: 43  DAGDAAQEALVRAFKNLAAFRGQCSFKTWLQHIIANVCR 81


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,787,701
Number of Sequences: 1657284
Number of extensions: 10779059
Number of successful extensions: 20407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20402
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)