Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1648
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0423 - 3092863-3094959                                           28   6.2  
01_05_0110 + 18225431-18226992,18227158-18228132,18228343-182284...    28   6.2  

>02_01_0423 - 3092863-3094959
          Length = 698

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 252 IKNDIK-VTKKANEYTLKMLNNRLSNYTPNNSGPTKTTELIQF*FDVSRSSLES 94
           ++  IK +TK  N  T+ +  NRLS   PN+ G  K  E +   ++     L S
Sbjct: 250 LEGSIKGITKLKNLVTIDLGQNRLSGSIPNSIGQLKRLEKLHLAYNSMSGELPS 303


>01_05_0110 +
           18225431-18226992,18227158-18228132,18228343-18228437,
           18228556-18228842
          Length = 972

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 237 KVTKKANEYTLKMLNNRLSNYTPNNSGPTKTTELIQF 127
           ++ K  N   + + NN+LS   PN  G  K+ E++ F
Sbjct: 529 EIGKLVNLNLIDLRNNQLSGKVPNQIGQLKSLEILDF 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,477,852
Number of Sequences: 37544
Number of extensions: 256576
Number of successful extensions: 385
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)