Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1648
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6560| Best HMM Match : F-box (HMM E-Value=2e-10)                    28   6.3  
SB_58662| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_3269| Best HMM Match : 5_nucleotid (HMM E-Value=0)                  28   6.3  

>SB_6560| Best HMM Match : F-box (HMM E-Value=2e-10)
          Length = 216

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 396 RKFVKKTGFKYQLYFATYQLHIIRSVCQMQNSRSLVPFK*GGNIY 530
           R+FVK  GF+Y+L  A Y+ H  +S    Q  R ++  K  G+IY
Sbjct: 117 REFVKMAGFEYRLGNAYYE-H-TKSETISQKKRIILQDKASGSIY 159


>SB_58662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 558 DTFSWYTKSEITI--IFGCTCNILERVTENVFL 650
           +TFS  TKSE  I     C C +LE   ENV L
Sbjct: 368 ETFSLNTKSETVIDKTLKCKCTLLEHKQENVKL 400


>SB_3269| Best HMM Match : 5_nucleotid (HMM E-Value=0)
          Length = 403

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 348 HALVTDSGDTENSAINRKFVKKTGFKYQLYFATYQ--LHII 464
           H +V D G   N+ ++ K++   GF Y    A+Y   LH +
Sbjct: 59  HTVVQDQGIFANNELSLKYINVYGFDYDYTLASYSNTLHFL 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,020,051
Number of Sequences: 59808
Number of extensions: 339388
Number of successful extensions: 590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)