Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1648
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80839-17|AAB37921.1|  372|Caenorhabditis elegans Serpentine rec...    29   3.2  
Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical p...    28   7.4  
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ...    28   7.4  

>U80839-17|AAB37921.1|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein97 protein.
          Length = 372

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 405 VKKTGFKYQLYFATYQLHIIRSVC 476
           V  T F Y LYFATY  H++ S+C
Sbjct: 304 VAYTDFGY-LYFATYVNHLVNSIC 326


>Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical
           protein Y49E10.23b protein.
          Length = 743

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 249 KNDIKVTKKANEYTLKMLNNRLSNYTPNN 163
           KN+    KK    TLK L + LS Y  NN
Sbjct: 491 KNNFSAFKKKTSATLKELKSELSGYRKNN 519


>Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical
           protein Y49E10.23a protein.
          Length = 734

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 249 KNDIKVTKKANEYTLKMLNNRLSNYTPNN 163
           KN+    KK    TLK L + LS Y  NN
Sbjct: 491 KNNFSAFKKKTSATLKELKSELSGYRKNN 519


>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
            protein H06I04.5 protein.
          Length = 1138

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -2

Query: 276  NYYSRKLDIKNDIKVTKKANEYTLKMLNNRLSNYTPNNSGPTKTTELIQF 127
            NY  + +DIK D+       ++TL  +   ++NY  N     KT +++ +
Sbjct: 909  NYSLKTIDIKTDLAEFTDKKDFTLYTV--EITNYRKNKGEQKKTVDILLY 956


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,005,699
Number of Sequences: 27780
Number of extensions: 276357
Number of successful extensions: 436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)