Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1648
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.5  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 406 LKKLASNTNYILLLINYISYEVCAKCKIPE 495
           +KK  +N +Y LL  NY  + +  K  +PE
Sbjct: 188 MKKTYNNIDYYLLAANYTGWYL-TKHNVPE 216


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 406 LKKLASNTNYILLLINYISYEVCAKCKIPE 495
           +KK  +N +Y LL  NY  + +  K  +PE
Sbjct: 188 MKKTYNNIDYYLLAANYTGWYL-TKHNVPE 216


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 587 DYNNFWMYV 613
           DYNN W+Y+
Sbjct: 194 DYNNTWVYI 202


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 525 YFHLT*MGLD 496
           YFH+T MGLD
Sbjct: 64  YFHVTVMGLD 73


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 246 NDIKVTKKANEYTLKMLNNRLSNYTPNNSGPTKTTELIQF 127
           N  ++  + N     +++   S+Y  NN+G  +  EL QF
Sbjct: 222 NHARLMSQDNHSKEYLVSIMFSHYDRNNNGNLEREELEQF 261


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = -2

Query: 237 KVTKKANEYTLKMLNNRLSNYTPNN 163
           K     N Y     NN  +NY  NN
Sbjct: 321 KTIHNNNNYNNNNYNNNYNNYNNNN 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,171
Number of Sequences: 438
Number of extensions: 3731
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)