Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1647
         (831 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1 prot...    38   4e-04
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   4.9  

>AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1
           protein.
          Length = 107

 Score = 37.9 bits (84), Expect = 4e-04
 Identities = 19/75 (25%), Positives = 38/75 (50%)
 Frame = +3

Query: 255 GHCKSLAPEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDY 434
           G CK +AP+  +   K A++   I + KVD  + ++LA  Y +   PT  F +    +  
Sbjct: 33  GPCKVIAPKLEEFQNKYADK---IVVVKVDVDECEELAAQYNIASMPTFLFIKRKEVVGQ 89

Query: 435 SGGRQADDIISWLKK 479
             G  A+ + +++++
Sbjct: 90  FSGANAEKLENFIQQ 104


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 629 QVFAIVSDEKVIKELEAEDEDVVLFKNFEEKRVKYEDEEITEDLLMLGCLSR 784
           Q+F +  +EK  K L+ +        N  EKR +  DE + E    +G ++R
Sbjct: 234 QLFKLYHNEKEAKRLKEDQISKQQELNIIEKRKEEADEVLKEKKKEVGKMTR 285


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 788,892
Number of Sequences: 2352
Number of extensions: 14922
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 87651612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)