Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1646
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   1.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   1.6  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   4.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.8  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   4.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 289 LAYSGARDLQWPTMEHRIQLKCT 221
           L YSG++     T  HRI LKC+
Sbjct: 63  LPYSGSKCTWTITSYHRINLKCS 85


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -3

Query: 497 SRGASLLLQPTDDVISLTTT*IVDRTAIPEEFESRVSSYTVALGEILFLSC 345
           ++G  L   P   +  LTT  ++ +  IP+E     S YT  + +I    C
Sbjct: 270 AKGGKLACPPAIFIFDLTTDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDC 320


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 526 RTYRCQYCYCIWFLFG 573
           R  +C Y YC+W  FG
Sbjct: 67  RQLKC-YMYCLWEQFG 81


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 249 MVGHCKSLAPEYAKAATKLAEEESPIKLAKVDAT 350
           MVG+  + +P Y  AA   +   SP   +   AT
Sbjct: 818 MVGNSPASSPRYLSAAATSSTSTSPRPASSTAAT 851


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 109 LKHAFRYYRHLFASLLRRRNSVKCRK 32
           LKH +   R   AS++ R+ +V C K
Sbjct: 165 LKHPWICQRERVASVVHRQETVDCLK 190


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 517 TG*RTYRCQYC 549
           TG + Y+C+YC
Sbjct: 115 TGEKPYQCEYC 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,086
Number of Sequences: 438
Number of extensions: 3356
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)