Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1644
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    28   1.2  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    27   3.8  
SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...    26   6.6  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    25   8.7  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   8.7  

>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +3

Query: 330 VYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPE----WLTTKSAFAKVPAIEI 485
           V+   YCPY   T   +  K+I  +V  IDL++  +    +L  K+    VP I I
Sbjct: 19  VFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFI 74


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 85   CVDM**NCNKNMITSTVSLAMHLIYSSFQGVRVISQVLEYVLP 213
            C D    C +N+ + ++++AM  +Y    G  +   + EYVLP
Sbjct: 1068 CYDAAKVCIRNLKSISLAIAMTRVYEGDDGPTLKRLINEYVLP 1110


>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 554 PLLPQDPLKKALDKIIVEASAPIQSLFIKILKFS 655
           P+L ++PLK A D  I+E+ + I ++  ++++ S
Sbjct: 135 PVLSEEPLKGASDTQILESDSQIVAMIKELIETS 168


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 141 GHAPNIFVVSRCSSYQSSIRIRL 209
           GH  N+ V++ C SY+ + RI+L
Sbjct: 365 GHESNVPVIACCESYKFTERIQL 387


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -2

Query: 593 CPMLSSKDLAAVKAF--SDRPHLNIQLSLSFVNGHIFC 486
           C  +   ++ A+KA    D   L ++ + +  NGH++C
Sbjct: 10  CKEIQENEIEALKAIFMDDFEELKVRNAWNVTNGHVYC 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,976
Number of Sequences: 5004
Number of extensions: 57786
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)