Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1644
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14) 78 7e-15
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 1e-12
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26) 39 0.004
SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05) 33 0.19
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20) 29 3.0
SB_13167| Best HMM Match : APH (HMM E-Value=1e-04) 29 4.0
SB_35487| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_20486| Best HMM Match : BacA (HMM E-Value=0.92) 28 7.0
SB_16652| Best HMM Match : I-set (HMM E-Value=1.2e-37) 28 7.0
>SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14)
Length = 238
Score = 78.2 bits (184), Expect = 7e-15
Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Frame = +3
Query: 282 HLRKGDPLPPFNGKLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEW-LTTKSA 458
HL GDP PP KLR+Y+MR+CPYA+R L L AK +DYE +NI+L +KP+W L +
Sbjct: 5 HLSNGDPRPPPGDKLRLYSMRFCPYAERPRLVLAAKGVDYECININLKNKPDWYLAEPNP 64
Query: 459 FAKVPAIEIAE 491
VP IE+ +
Sbjct: 65 RGLVPMIEMPD 75
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 509 SLVTVEYLDEVYPKRPLLPQDPLKKALDKIIVEASAPIQSLFIKIL--KFSDTVNEEHVA 682
SL+ EYLDE++P+ P+ P D +K +++++ + S F ++L + +
Sbjct: 82 SLLCCEYLDELFPQNPMYPSDAFEKNRQRLLIDRFGKVTSSFYQMLMRDMDEDALKGQTE 141
Query: 683 AYHKALDFIQEQLKTE 730
+K L + +LK +
Sbjct: 142 TLNKELSLYENELKNK 157
>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 70.5 bits (165), Expect = 1e-12
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Frame = +3
Query: 261 NINFNTKHLRKGD--PLPPFNGKLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKP 434
+I H+ KG P P N KLR+Y+MR+CP+A+R L L AK +DYE VN++L KP
Sbjct: 8 SITMPVTHISKGSSRPAKPQN-KLRLYSMRFCPFAERPRLVLAAKGLDYECVNVNLKSKP 66
Query: 435 EWLTT-KSAFAKVPAIEIAEDVTIYEA 512
EW T KVP +E + I E+
Sbjct: 67 EWFQTHPDCEGKVPTLETMDGKLIPES 93
Score = 31.5 bits (68), Expect = 0.76
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 509 SLVTVEYLDEVYPKRPLLPQDPLKKALDKIIVE 607
S++ E+L++ Y K PL P DP K+ K++ +
Sbjct: 93 SVIICEFLEDYYRKIPLYPCDPYAKSRQKLLAQ 125
>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
Length = 492
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = +3
Query: 327 RVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDK-PEWL 443
++YN +CP+AQR +A+ AK+ ++E + + +K PEWL
Sbjct: 263 KLYNAWFCPFAQRAWIAMLAKKAEFEYIEQNPYNKTPEWL 302
>SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)
Length = 142
Score = 33.5 bits (73), Expect = 0.19
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +2
Query: 521 VEYLDEVYPKRPLLPQ-DPLKKAL----DKIIVEASAPIQSLFIKILKF 652
+EYLDE P PLLP+ DP K+AL I PIQ+L K+L++
Sbjct: 1 MEYLDETRPDPPLLPRGDPHKRALVRQISMTIASGIQPIQNL--KVLQY 47
>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
Length = 1037
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +3
Query: 315 NGKLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDK----PEWLTTKSAFAKVPAIE 482
N + +++ +CP+ ++ + + Y + +DL+D E L KS VP +
Sbjct: 576 NNAVMIFSKSFCPFCKKVKAIFESINVQYTAMELDLVDNGPAIQEALLEKSGQKTVPNVY 635
Query: 483 I 485
I
Sbjct: 636 I 636
>SB_13167| Best HMM Match : APH (HMM E-Value=1e-04)
Length = 374
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +2
Query: 635 IKILKFSDTVNEEHVAAYHKALDFIQEQ 718
+KIL SD+ NEE + A + A+D+++E+
Sbjct: 60 LKILNSSDSSNEELIYAENAAIDYLRER 87
>SB_35487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +3
Query: 252 GSRNINFNTKHLRKGDPLPPFNGKLRVYNMRYCPYAQRTI 371
G+R +++ +++ G P+ + +Y +RY PY R +
Sbjct: 104 GTRYVSYGIRYVPYGTCYVPYGTRYVLYGIRYVPYGTRYV 143
>SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1644
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 602 VEASAPIQSLFIKILKFSDTVNEEHVAAYHKALDFIQEQLKTEALCSW 745
V + +P S +K L F +TVN EH + K + + ++ L W
Sbjct: 589 VTSLSPDDSYSLKTLPFHETVNGEHTSIAEKKVYVLPSEIPKAGLNIW 636
>SB_20486| Best HMM Match : BacA (HMM E-Value=0.92)
Length = 682
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 203 TSYLILVYHFEICLQLRKQKYQL*HKAFKER*SFTAFQWKIASVQHEVLPLRSAN 367
T L++VY + CLQ K+ ++ F++ + F W ++ V+PLR AN
Sbjct: 226 TVILVMVYFYAECLQADKEGL---YRYFRD--PYNYFDWLGLTLTFLVIPLRFAN 275
>SB_16652| Best HMM Match : I-set (HMM E-Value=1.2e-37)
Length = 552
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 57 YYSGNITLRCNATSH 13
Y GN+TL CNA+SH
Sbjct: 370 YLGGNVTLYCNASSH 384
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,651,503
Number of Sequences: 59808
Number of extensions: 410213
Number of successful extensions: 853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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