Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1644
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16622-3|ABC71837.1| 254|Caenorhabditis elegans Hypothetical pr... 81 8e-16
L16622-1|ABB51198.1| 537|Caenorhabditis elegans Hypothetical pr... 81 8e-16
L23651-11|AAA27959.1| 250|Caenorhabditis elegans Hypothetical p... 77 1e-14
Z93377-6|CAB07572.2| 254|Caenorhabditis elegans Hypothetical pr... 69 3e-12
AF025462-3|AAB71002.1| 309|Caenorhabditis elegans Hypothetical ... 68 6e-12
L16622-2|ABB51199.1| 246|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AF025462-4|AAN72424.1| 123|Caenorhabditis elegans Hypothetical ... 42 4e-04
Z66560-1|CAA91449.1| 214|Caenorhabditis elegans Hypothetical pr... 40 0.002
AC006804-5|AAF60754.1| 213|Caenorhabditis elegans Hypothetical ... 39 0.004
AC024200-13|AAF36004.1| 214|Caenorhabditis elegans Glutathione ... 35 0.071
Z70310-4|CAA94368.1| 347|Caenorhabditis elegans Hypothetical pr... 32 0.38
Z49068-7|CAA88859.1| 552|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z22176-11|CAA80141.1| 784|Caenorhabditis elegans Hypothetical p... 28 6.2
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family... 28 6.2
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family... 28 6.2
U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical pr... 28 8.1
>L16622-3|ABC71837.1| 254|Caenorhabditis elegans Hypothetical
protein C02D5.3c protein.
Length = 254
Score = 81.0 bits (191), Expect = 8e-16
Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Frame = +3
Query: 273 NTKHLRKGDPLP--PFNGKLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWLT 446
NTK ++ GDP P P +G +R+YNMRYCP+AQR ++ + K+I EV+NI L KP+W
Sbjct: 8 NTKVVKNGDPAPAPPASGTIRIYNMRYCPWAQRALIFASLKKIPTEVINIHLDQKPDWFF 67
Query: 447 TKSAFAKVPAIE 482
TK +VPA+E
Sbjct: 68 TKHYKGQVPALE 79
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Frame = +2
Query: 503 LRSLVTVEYLDEVYPKRPLLPQDPLKKALDKIIVE-ASAPIQSLF---IKILKFSDTVNE 670
+ S V EYLD++YP+ ++P D +K K++++ S + S F ++ K SD + E
Sbjct: 88 IESAVIPEYLDDIYPEPRIIPTDHYEKVQQKLLLDRISGQLSSAFYGVVQAAKISDLLKE 147
Query: 671 EHVAAYHKALDFIQEQL 721
+ + KA D +E L
Sbjct: 148 K-LVELAKAYDTAEELL 163
>L16622-1|ABB51198.1| 537|Caenorhabditis elegans Hypothetical
protein C02D5.3a protein.
Length = 537
Score = 81.0 bits (191), Expect = 8e-16
Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Frame = +3
Query: 273 NTKHLRKGDPLP--PFNGKLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWLT 446
NTK ++ GDP P P +G +R+YNMRYCP+AQR ++ + K+I EV+NI L KP+W
Sbjct: 291 NTKVVKNGDPAPAPPASGTIRIYNMRYCPWAQRALIFASLKKIPTEVINIHLDQKPDWFF 350
Query: 447 TKSAFAKVPAIE 482
TK +VPA+E
Sbjct: 351 TKHYKGQVPALE 362
Score = 42.3 bits (95), Expect = 4e-04
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = +2
Query: 503 LRSLVTVEYLDEVYPKRPLLPQDPLKKALDKIIVE-ASAPIQSLFIKILKF--SDTVNEE 673
+ S V EYLD++YP+ +LP DP +K K++++ S + F +++ + + EE
Sbjct: 80 IESAVIPEYLDDIYPETRILPTDPYEKVQQKLLLDRISGQVSPAFYGVVQAVKNPDLREE 139
Query: 674 HVAAYHKALDFIQEQLKTEALCSWT 748
A KA D EQL T S T
Sbjct: 140 KFADIKKAYD-NAEQLLTGDFYSGT 163
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3
Query: 351 PYAQRTILALNAKQIDYEVVNIDLIDKPEWLTTKSAFAKVPAIE 482
P AQR ++ + K I +V+N+ L +KP+W +K +VP +E
Sbjct: 28 PVAQRALIYASVKNIPSDVINVHLQEKPDWYFSKHYKGQVPTLE 71
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Frame = +2
Query: 503 LRSLVTVEYLDEVYPKRPLLPQDPLKKALDKIIVE-ASAPIQSLF---IKILKFSDTVNE 670
+ S V EYLD++YP+ ++P D +K K++++ S + S F ++ K SD + E
Sbjct: 371 IESAVIPEYLDDIYPEPRIIPTDHYEKVQQKLLLDRISGQLSSAFYGVVQAAKISDLLKE 430
Query: 671 EHVAAYHKALDFIQEQL 721
+ + KA D +E L
Sbjct: 431 K-LVELAKAYDTAEELL 446
>L23651-11|AAA27959.1| 250|Caenorhabditis elegans Hypothetical
protein C29E4.7 protein.
Length = 250
Score = 77.4 bits (182), Expect = 1e-14
Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = +3
Query: 276 TKHLRKGDPLPPFN-GKLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWLTTK 452
+K +RKGD PP + G RVYNMR+CP+A+R +L + AK I+ EVVN+++ DK EW TK
Sbjct: 8 SKAIRKGDAEPPLSKGSFRVYNMRFCPWAERAMLYVAAKGIEAEVVNLNVTDKLEWYWTK 67
Query: 453 SAFAKVPAIE 482
K PA+E
Sbjct: 68 HYQGKAPAVE 77
Score = 32.7 bits (71), Expect = 0.29
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 524 EYLDEVYPKRPLLPQDPLKKALDKIIVE 607
EYLD+ +P+ +LP DP +K K++ +
Sbjct: 91 EYLDDAFPETRILPTDPYEKVQQKLLAD 118
>Z93377-6|CAB07572.2| 254|Caenorhabditis elegans Hypothetical
protein F13A7.10 protein.
Length = 254
Score = 69.3 bits (162), Expect = 3e-12
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Frame = +3
Query: 273 NTKHLRKGD--PLPPFNGKLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWLT 446
N+K L+ GD P P R+Y+MR+CP AQR ++ + K+I EV+NI+L KP+W
Sbjct: 8 NSKALKTGDLPPPSPSPNTFRIYSMRFCPAAQRALIYASVKKIPSEVININLQQKPDWYF 67
Query: 447 TKSAFAKVPAIEIAE 491
TK+ +VP +E AE
Sbjct: 68 TKNYKGQVPTLEHAE 82
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +2
Query: 503 LRSLVTVEYLDEVYPKRPLLPQDPLKKALDKIIVE 607
+ S V EYLD+++P+ +LP DP +K K+++E
Sbjct: 88 IESAVIPEYLDDIFPETKILPSDPYEKVQQKLLLE 122
>AF025462-3|AAB71002.1| 309|Caenorhabditis elegans Hypothetical
protein K10F12.4a protein.
Length = 309
Score = 68.1 bits (159), Expect = 6e-12
Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +3
Query: 252 GSRNINFNTKHLRKGDPLPPFN-GKLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLID 428
GS N+ L G PP G R+Y+MR+CPYAQR ++ L K I EVVN++
Sbjct: 74 GSNIRGLNSPTLHPGSIEPPLTPGNYRLYSMRFCPYAQRVLIYLAKKNIPVEVVNVNPDR 133
Query: 429 KPEWLTTKSAFAKVPAIEI 485
P W KS +VPA+EI
Sbjct: 134 SPNWYLPKSPIGRVPALEI 152
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/40 (50%), Positives = 28/40 (70%)
Frame = +2
Query: 509 SLVTVEYLDEVYPKRPLLPQDPLKKALDKIIVEASAPIQS 628
S V VEYLDE++P +LP+D +KA KI+VE +PI +
Sbjct: 160 SNVIVEYLDELFPTNTILPRDAYEKAHQKILVERLSPIMN 199
>L16622-2|ABB51199.1| 246|Caenorhabditis elegans Hypothetical
protein C02D5.3b protein.
Length = 246
Score = 42.3 bits (95), Expect = 4e-04
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = +2
Query: 503 LRSLVTVEYLDEVYPKRPLLPQDPLKKALDKIIVE-ASAPIQSLFIKILKF--SDTVNEE 673
+ S V EYLD++YP+ +LP DP +K K++++ S + F +++ + + EE
Sbjct: 80 IESAVIPEYLDDIYPETRILPTDPYEKVQQKLLLDRISGQVSPAFYGVVQAVKNPDLREE 139
Query: 674 HVAAYHKALDFIQEQLKTEALCSWT 748
A KA D EQL T S T
Sbjct: 140 KFADIKKAYD-NAEQLLTGDFYSGT 163
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3
Query: 351 PYAQRTILALNAKQIDYEVVNIDLIDKPEWLTTKSAFAKVPAIE 482
P AQR ++ + K I +V+N+ L +KP+W +K +VP +E
Sbjct: 28 PVAQRALIYASVKNIPSDVINVHLQEKPDWYFSKHYKGQVPTLE 71
>AF025462-4|AAN72424.1| 123|Caenorhabditis elegans Hypothetical
protein K10F12.4b protein.
Length = 123
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 252 GSRNINFNTKHLRKGDPLPPFN-GKLRVYNMRYCPYAQRTILALNAKQI 395
GS N+ L G PP G R+Y+MR+CPYAQR ++ L K I
Sbjct: 74 GSNIRGLNSPTLHPGSIEPPLTPGNYRLYSMRFCPYAQRVLIYLAKKNI 122
>Z66560-1|CAA91449.1| 214|Caenorhabditis elegans Hypothetical
protein D1053.1 protein.
Length = 214
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Frame = +2
Query: 509 SLVTVEYLDEVYPKRPLLPQDPLKKALDKII-VEASAPIQSLF-IKILK 649
SL +EYL+E +P PLLP+DP+K+A + I + ++ IQ L +K+L+
Sbjct: 69 SLAIIEYLEETHPDVPLLPKDPIKRAHARAISLLVASGIQPLHNLKVLQ 117
>AC006804-5|AAF60754.1| 213|Caenorhabditis elegans Hypothetical
protein Y53G8B.1 protein.
Length = 213
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2
Query: 509 SLVTVEYLDEVYPKRPLLPQDPLKKALDKII 601
S+ +EYLDE+YP PLLP++P KA + I
Sbjct: 68 SMAIIEYLDEIYPDPPLLPKEPELKARARAI 98
>AC024200-13|AAF36004.1| 214|Caenorhabditis elegans Glutathione
s-transferase protein43 protein.
Length = 214
Score = 34.7 bits (76), Expect = 0.071
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 509 SLVTVEYLDEVYPKRPLLPQDPLKKALDK-IIVEASAPIQSL 631
SL +EYLDE YP P LP++ K++ + I + A IQ L
Sbjct: 69 SLAIIEYLDEAYPDPPFLPKELDKRSYSRAIALHIVASIQPL 110
>Z70310-4|CAA94368.1| 347|Caenorhabditis elegans Hypothetical
protein R11A8.5 protein.
Length = 347
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 315 NGKLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWLTTKSAFAKVPAIEIAE 491
N KLR+Y CP+ + L+ YEVV ++ + + + + + + KVP + E
Sbjct: 63 NLKLRLYQYETCPFCCKVRAFLDYHGFSYEVVEVNPVTRSQ-IKFSTTYKKVPILRSGE 120
>Z49068-7|CAA88859.1| 552|Caenorhabditis elegans Hypothetical
protein K01C8.8 protein.
Length = 552
Score = 31.5 bits (68), Expect = 0.66
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 482 NSRRCDHLRSLVTVEYLDEVYPKRPLLPQDPLKKALDKIIVEASAPIQSLFIKILKFSDT 661
N R+ ++ S T+ +LD Y KR +L Q + A+DK I+ KI++ T
Sbjct: 454 NYRKIKYIDSSETIPFLDTCYRKRRILCQKRAENAVDKTILNEPKEKSVWKEKIIEIIQT 513
Query: 662 VNE 670
E
Sbjct: 514 TPE 516
>Z22176-11|CAA80141.1| 784|Caenorhabditis elegans Hypothetical
protein ZK1098.3 protein.
Length = 784
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +2
Query: 578 KKALDKIIVEASAPIQSLFIKILKFSDTVNEEHVAAYHKALDFIQEQLKT 727
+K+L I++A I +K K S++V EE + Y K+L+F E LK+
Sbjct: 15 QKSLKFEIIDARMKIFKDIVKS-KSSESVKEEQI--YQKSLEFFDEDLKS 61
>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
protein 5, isoformb protein.
Length = 1306
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 333 YNMRYCPYAQRTILALNAK-QIDYEVVNIDLIDKPEWLTTKSAFAKVPA 476
Y + P T++ ++ + + DYE N++++ E LT KS VPA
Sbjct: 1166 YPQKLGPIYHPTMMGVDPRTEYDYETQNVNMLISDEDLTMKSGSIGVPA 1214
>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
protein 5, isoforma protein.
Length = 1544
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 333 YNMRYCPYAQRTILALNAK-QIDYEVVNIDLIDKPEWLTTKSAFAKVPA 476
Y + P T++ ++ + + DYE N++++ E LT KS VPA
Sbjct: 1310 YPQKLGPIYHPTMMGVDPRTEYDYETQNVNMLISDEDLTMKSGSIGVPA 1358
>U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical
protein C18H9.3 protein.
Length = 918
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 524 EYLDEVYPKRPLLPQDPLKKALDKI 598
EYL+++ P RP+LP P A + +
Sbjct: 438 EYLEDIEPPRPILPSIPYPSATNPL 462
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,060,961
Number of Sequences: 27780
Number of extensions: 316885
Number of successful extensions: 781
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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