Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1644
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.3  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   9.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   9.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.3  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 297 DPLPPFNGKLRVYNMRYCPYAQRTILALNAK 389
           DPL P +  LR+Y      Y  R  L L+ +
Sbjct: 157 DPLIPVHFALRIYRNGTVNYLMRRHLILSCQ 187


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 297 DPLPPFNGKLRVYNMRYCPYAQRTILALNAK 389
           DPL P +  LR+Y      Y  R  L L+ +
Sbjct: 157 DPLIPVHFALRIYRNGTVNYLMRRHLILSCQ 187


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 297 DPLPPFNGKLRVYNMRYCPYAQRTILALNAK 389
           DPL P +  LR+Y      Y  R  L L+ +
Sbjct: 208 DPLIPVHFALRIYRNGTVNYLMRRHLILSCQ 238


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 297 DPLPPFNGKLRVYNMRYCPYAQRTILALNAK 389
           DPL P +  LR+Y      Y  R  L L+ +
Sbjct: 157 DPLIPVHFALRIYRNGTVNYLMRRHLILSCQ 187


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 327 RVYNMRYCPYAQRTILALNAKQID 398
           R + +RY PY QR  +  +  ++D
Sbjct: 462 RPFEVRYDPYTQRVEILDSVDRLD 485


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 381 NAKQIDYEVVNIDLIDKP 434
           N+K++ Y ++NI+ I  P
Sbjct: 319 NSKKLYYNIINIEQIPVP 336


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 381 NAKQIDYEVVNIDLIDKP 434
           N+K++ Y ++NI+ I  P
Sbjct: 330 NSKKLYYNIINIEQIPVP 347


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -1

Query: 747 VQEHSASVFNCSWMKSKALWYAATCSSLTVSEN 649
           +Q     VF+C ++ + +  + A C+ +  S N
Sbjct: 130 IQWSKLQVFDCRYVTTTSGMFEALCNHIKYSTN 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,886
Number of Sequences: 438
Number of extensions: 3708
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)