Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1643
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    27   2.0  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    25   8.2  

>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = +3

Query: 150 RSTECIPKRIRSRELSARLFQISTQYYVFYFFIIFPSLQY*SYVL 284
           ++TE I ++ R+     ++FQ+S+     +FF++F +    +Y+L
Sbjct: 23  QNTETIAEQERNASRLPQMFQMSSHPVALFFFLLFRTGAIVAYIL 67


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 113 YVIAHPTLVKHCFCWDL 63
           ++   P+  +HC CW L
Sbjct: 241 FIFLSPSSARHCLCWSL 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,014
Number of Sequences: 5004
Number of extensions: 55211
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)