Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1643
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   8.8  
SB_17518| Best HMM Match : F5_F8_type_C (HMM E-Value=1e-29)            28   8.8  
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                   28   8.8  

>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2484

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 228  YVFYFFIIFPSLQY*SYVLISNMSHLI*YYKFSYLAIVK---I*QCNIEFV 371
            YVF FF   PSLQY   +++     +   +K SY+  V    + Q N+ +V
Sbjct: 1809 YVFLFFPDSPSLQYLEMLVMLKAVRIFQLFKLSYVLQVTLSYVLQVNLSYV 1859


>SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1885

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 168  PKRIRSRELSARLFQISTQYYVFYFFIIFPSLQ 266
            PKR       ARL ++S Q + F FF +F +L+
Sbjct: 1333 PKRDEGYARKARLHKVSEQMFAFGFFRLFRALR 1365


>SB_17518| Best HMM Match : F5_F8_type_C (HMM E-Value=1e-29)
          Length = 213

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 13 PSMCQAAALSCCGFSDDKSQQKQC 84
          P +CQ   L C G  D++SQQ  C
Sbjct: 17 PVLCQNTYLFCVGIPDEQSQQCVC 40


>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +2

Query: 164 YSKTHTLP*IERTIISNQYSVLRVLFF--YYIPVSSILVLC 280
           YSK   L  I+ T+IS++   +RV+F   YY+   +++V C
Sbjct: 18  YSKMALLIRIDDTVISDEEVKIRVVFLSAYYLYFRAVIVRC 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,160,648
Number of Sequences: 59808
Number of extensions: 393675
Number of successful extensions: 711
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)