Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1643
         (719 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065528-1|BAC05775.1|  294|Homo sapiens seven transmembrane hel...    31   4.1  
BC141865-1|AAI41866.1|  726|Homo sapiens transmembrane channel-l...    31   5.5  
BC110296-1|AAI10297.1|  726|Homo sapiens transmembrane channel-l...    31   5.5  
BC028076-1|AAH28076.1|  287|Homo sapiens TMC8 protein protein.         31   5.5  
AY236500-1|AAP69878.1|  726|Homo sapiens transmembrane channel-l...    31   5.5  
AY099358-1|AAM44454.1|  726|Homo sapiens large EVER2 protein pro...    31   5.5  
AY057380-1|AAL25837.1|  726|Homo sapiens EVIN2 protein.                31   5.5  
AK090478-1|BAC03459.1|  782|Homo sapiens FLJ00400 protein protein.     31   5.5  

>AB065528-1|BAC05775.1|  294|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 294

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 203 SCAQFTGAYAFWNTFSASVMASRVHAF-PLAYVIAHPTLVKHCFCWDLSSE 54
           +C    GA A +  +   V+ S VH F   A  I  PT+V+H F W LS+E
Sbjct: 242 TCGSHIGAVAVF--YIPWVVLSVVHRFFHKASPICPPTIVQHLFPWPLSAE 290


>BC141865-1|AAI41866.1|  726|Homo sapiens transmembrane channel-like
           8 protein.
          Length = 726

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 191 FTGAYAFWNTFSASVMASRVHAFPLAYVIAHPTLVKHCFCWDL 63
           FT  Y F+  +     +S V++  LAY+++    +  CFC  L
Sbjct: 179 FTNTYLFYGAYRVGPESSSVYSIRLAYLLSPLACLLLCFCGTL 221


>BC110296-1|AAI10297.1|  726|Homo sapiens transmembrane channel-like
           8 protein.
          Length = 726

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 191 FTGAYAFWNTFSASVMASRVHAFPLAYVIAHPTLVKHCFCWDL 63
           FT  Y F+  +     +S V++  LAY+++    +  CFC  L
Sbjct: 179 FTNTYLFYGAYRVGPESSSVYSIRLAYLLSPLACLLLCFCGTL 221


>BC028076-1|AAH28076.1|  287|Homo sapiens TMC8 protein protein.
          Length = 287

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 191 FTGAYAFWNTFSASVMASRVHAFPLAYVIAHPTLVKHCFCWDL 63
           FT  Y F+  +     +S V++  LAY+++    +  CFC  L
Sbjct: 179 FTNTYLFYGAYRVGPESSSVYSIRLAYLLSPLACLLLCFCGTL 221


>AY236500-1|AAP69878.1|  726|Homo sapiens transmembrane channel-like
           protein 8 protein.
          Length = 726

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 191 FTGAYAFWNTFSASVMASRVHAFPLAYVIAHPTLVKHCFCWDL 63
           FT  Y F+  +     +S V++  LAY+++    +  CFC  L
Sbjct: 179 FTNTYLFYGAYRVGPESSSVYSIRLAYLLSPLACLLLCFCGTL 221


>AY099358-1|AAM44454.1|  726|Homo sapiens large EVER2 protein
           protein.
          Length = 726

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 191 FTGAYAFWNTFSASVMASRVHAFPLAYVIAHPTLVKHCFCWDL 63
           FT  Y F+  +     +S V++  LAY+++    +  CFC  L
Sbjct: 179 FTNTYLFYGAYRVGPESSSVYSIRLAYLLSPLACLLLCFCGTL 221


>AY057380-1|AAL25837.1|  726|Homo sapiens EVIN2 protein.
          Length = 726

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 191 FTGAYAFWNTFSASVMASRVHAFPLAYVIAHPTLVKHCFCWDL 63
           FT  Y F+  +     +S V++  LAY+++    +  CFC  L
Sbjct: 179 FTNTYLFYGAYRVGPESSSVYSIRLAYLLSPLACLLLCFCGTL 221


>AK090478-1|BAC03459.1|  782|Homo sapiens FLJ00400 protein protein.
          Length = 782

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 191 FTGAYAFWNTFSASVMASRVHAFPLAYVIAHPTLVKHCFCWDL 63
           FT  Y F+  +     +S V++  LAY+++    +  CFC  L
Sbjct: 235 FTNTYLFYGAYRVGPESSSVYSIRLAYLLSPLACLLLCFCGTL 277


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,648,768
Number of Sequences: 237096
Number of extensions: 1734388
Number of successful extensions: 2271
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2271
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)