Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1643
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74034-3|CAF31476.1|  322|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z68004-1|CAA91981.1|  435|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>Z74034-3|CAF31476.1|  322|Caenorhabditis elegans Hypothetical
           protein F43A11.6 protein.
          Length = 322

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 207 IIVRSIHGSVCVLEYIQCFGY-GVESTCFSISICHCASYVSEALFLLGFV 61
           +IV  I GSVC L  +  F Y   E T F++ IC   S  +  + L GF+
Sbjct: 26  MIVNGIFGSVCNLSIVYIFMYVPKEKTSFNL-ICVFRSLGNTIILLWGFI 74


>Z68004-1|CAA91981.1|  435|Caenorhabditis elegans Hypothetical
           protein F47B10.1 protein.
          Length = 435

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 298 AILFDITSFLI*LSLKFNNAILNLFRCRLEGLIGCMINQCDL 423
           A LFD+        L+   A  NL   RL+G IGCM+N   L
Sbjct: 257 AKLFDLKDKKQEDELEIRAAAANLNYIRLDGTIGCMVNGAGL 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,227,200
Number of Sequences: 27780
Number of extensions: 304203
Number of successful extensions: 669
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)