Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1642
         (662 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    23   3.0  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   3.9  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   6.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   6.8  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   9.0  

>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 446 EDMKYSEESNNHGNRILPQYKQLSRRWIRDCS 541
           ++MKY E       R+ P    + RR   DC+
Sbjct: 42  QEMKYLEMVLKEAQRLYPSVPVIERRLEVDCN 73


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 197 LGLLERHTFGY 165
           LG++ RH FGY
Sbjct: 7   LGIMHRHCFGY 17


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -2

Query: 646 GNRCVRPPPGKSPSMTSGSPNPVLESFTAMRYL 548
           G+  +  P G +P+ +S SP P     +  ++L
Sbjct: 53  GHGSLLSPSGNTPNKSSTSPYPPNHPLSGSKHL 85


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 216 NLHFVCTWLAGTAYFRLCT 160
           +L F C ++  T +F LCT
Sbjct: 82  HLLFYCPFIIFTVHFLLCT 100


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 616 KSPSMTSGSPNP 581
           +SPS TS SP P
Sbjct: 283 QSPSSTSSSPEP 294


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,179
Number of Sequences: 336
Number of extensions: 3258
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)