Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1642
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      27   2.4  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   7.4  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   9.7  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    25   9.7  

>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/47 (21%), Positives = 25/47 (53%)
 Frame = +1

Query: 223 WSLRSHFGLSNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGK 363
           W++     L+NV  +   T+ +     + N + TN+ + A+V+++ +
Sbjct: 174 WAIAVWLFLANVFFHEYTTETIRPHVRLHNSLSTNAALSASVVLASR 220


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 479 DCSILLNISCPLLDRLTTSSFVLQFSIMLISAPAMKHPGLPDIMTA 342
           D S LLN    +L+ L  +   ++    L   P M+H  + D+MTA
Sbjct: 499 DKSQLLNAYQAVLNCLQDNDLPVRIQAALALQPLMRHLEVHDVMTA 544


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = +1

Query: 262 VNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENC--KTKEEVVS 435
           +N LNT++    S  +NE++  +   + ++IS +P    A  ++  ++ C   ++EE++ 
Sbjct: 434 LNQLNTEIEARQSEKLNEVQEETQRLSQLLISSQP----ALTEVKHLKLCLSDSQEELLQ 489

Query: 436 LSKR 447
           L+ +
Sbjct: 490 LNAK 493


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 196 STYKMQIGQWSLRSHFGLSNVKVN 267
           S Y + + +WS+ S+FG S   +N
Sbjct: 38  SIYSIYVDKWSITSYFGNSKNLIN 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,259
Number of Sequences: 5004
Number of extensions: 52824
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)