Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1642
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 54 8e-08
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 52 4e-07
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 51 7e-07
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 51 9e-07
02_05_0163 + 26400486-26400621,26401477-26401646,26402623-264027... 50 2e-06
02_05_0164 + 26405052-26405208,26405304-26405473,26406278-264063... 37 0.012
06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908 36 0.022
12_01_0945 + 9351915-9351929,9352221-9352386,9352903-9353024,935... 31 1.1
03_05_0489 - 24858483-24858637,24858811-24858921,24859013-248594... 30 1.4
03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798 30 1.4
01_03_0096 + 12492502-12492708,12500878-12501294,12501397-12501816 30 1.9
10_08_1007 - 22210263-22210400,22210506-22210547,22210626-222107... 29 2.5
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026 29 2.5
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 29 4.4
03_02_0344 - 7654551-7656149 29 4.4
12_02_0521 - 19955475-19956076,19957146-19958403 28 5.8
10_08_0760 + 20381117-20381350,20381451-20381639,20382317-20382910 28 7.6
09_02_0103 - 4324578-4324639,4324848-4324983 28 7.6
08_02_1168 + 24853895-24854216,24854264-24854286,24856102-248561... 28 7.6
04_04_0658 + 27006245-27006305,27006447-27006523,27006798-270072... 28 7.6
01_06_0544 + 30118208-30118417,30118959-30119063,30119179-301192... 28 7.6
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 54.4 bits (125), Expect = 8e-08
Identities = 26/49 (53%), Positives = 34/49 (69%)
Frame = +3
Query: 516 LGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQRLPALTSI 662
LGGGLE A+AC RI+ ++ GLPE+ LG++PG G TQRLP L +
Sbjct: 116 LGGGLEVAMACHARISTPTAQ--LGLPELQLGVIPGFGGTQRLPRLVGL 162
Score = 31.1 bits (67), Expect = 0.82
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = +1
Query: 247 LSNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCK-TKE 423
+ N VNSL+ V+ + E + ++A ++++GK G F G DIS + + K
Sbjct: 25 ICNPPVNSLSIDVLLSLKENYAEALRRNDVKA-IVVTGKGGKFSGGFDISSFGSVQGGKV 83
Query: 424 EVVSLSKRGHEIFR-RIEQSRKPYIAAI 504
E + +I +E + KP +AAI
Sbjct: 84 EQPKVGYISIDIITDTLEAATKPSVAAI 111
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/49 (48%), Positives = 33/49 (67%)
Frame = +3
Query: 516 LGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQRLPALTSI 662
LGGGLE + C RI+ +++ GLPE+ LG++PG G TQRLP L +
Sbjct: 111 LGGGLELTMGCHARISTPEAQ--LGLPELTLGIIPGFGGTQRLPRLVGL 157
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = +3
Query: 516 LGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQRLPALTSI 662
LGGGLE + C R++ ++ GLPE+ LG++PG G TQRLP L +
Sbjct: 113 LGGGLELVMVCHARVSTSSAQ--LGLPELQLGIIPGLGGTQRLPRLVGL 159
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 50.8 bits (116), Expect = 9e-07
Identities = 23/49 (46%), Positives = 34/49 (69%)
Frame = +3
Query: 516 LGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQRLPALTSI 662
LGGGLE ++ C+ RI++ ++ GLPE+ LG++P G TQRLP L +
Sbjct: 112 LGGGLEISMVCQARISIPTAQ--LGLPELQLGVIPAFGGTQRLPRLVGL 158
>02_05_0163 +
26400486-26400621,26401477-26401646,26402623-26402713,
26402822-26402873,26403462-26403565,26403648-26403724,
26403890-26404069
Length = 269
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/48 (50%), Positives = 32/48 (66%)
Frame = +3
Query: 510 SCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQRLPAL 653
+ LGGGLE AL+C RI +++ GLPE L ++PG G TQRLP +
Sbjct: 115 AALGGGLELALSCDLRICGENAT--LGLPETGLAIIPGAGGTQRLPRI 160
Score = 36.7 bits (81), Expect = 0.016
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +1
Query: 265 NSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMI 402
N++N + M + +V ++E + ++ ++ S PG F AGAD+ +
Sbjct: 59 NAINWEAMRLLRGVVEKVEADDTVKVVLVTSSVPGVFCAGADLKAL 104
>02_05_0164 +
26405052-26405208,26405304-26405473,26406278-26406352,
26406570-26406660,26406768-26406848,26407192-26407353,
26407425-26407501,26407670-26407846
Length = 329
Score = 37.1 bits (82), Expect = 0.012
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Frame = +3
Query: 510 SCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPG---------GGRTQRLPAL 653
+ GGGLE AL+C RI +++ F LPE L ++PG G TQRLP +
Sbjct: 147 AAFGGGLELALSCDLRICGENAT--FSLPETGLAIIPGYVFKMALYFSGGTQRLPRI 201
>06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908
Length = 88
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +1
Query: 262 VNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVVSL 438
+N++N ++ ++E ETN ++ ++ S P F AG D+ + N T E++ +
Sbjct: 30 LNAMNLEMDLRYKAFLDEWETNPSVKCVLVESSSPRAFSAGGDVKRLANDCTMPEIIEV 88
>12_01_0945 +
9351915-9351929,9352221-9352386,9352903-9353024,
9353098-9353214,9356997-9357077,9357204-9357272,
9357727-9357790,9357988-9358067,9358164-9358247,
9358418-9358502,9359658-9359743,9359924-9360045,
9360841-9360901,9360981-9361166,9363622-9363723,
9363803-9363844,9363949-9364086
Length = 539
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 504 TSSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQRLPAL 653
T +GGG ++ ++R+ V DS T F +PE LGL P G + L L
Sbjct: 243 TGIVMGGGAGVSIHGRFRV-VTDS-TVFAMPETALGLFPDIGASYFLSRL 290
>03_05_0489 -
24858483-24858637,24858811-24858921,24859013-24859421,
24859746-24859800,24860042-24860318,24860442-24860562,
24860831-24861438,24861552-24861741
Length = 641
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 628 PPPGKSPSMTSGSPN--PVLESFTAMRYLHARAVSNPPPR 515
PPPGK + +G PN L +T +RY A+ PPP+
Sbjct: 551 PPPGKYYVVDAGYPNRPGYLSPYTRIRYHVAQWNDGPPPQ 590
>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
Length = 268
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/81 (24%), Positives = 42/81 (51%)
Frame = +1
Query: 262 VNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVVSLS 441
+N+L +M ++ ++ + G+ AAV+++G+ F +G D++ E K +V
Sbjct: 34 LNALTRPMMVSLAAAFRRLDADDGV-AAVVLAGRGRAFCSGVDLTAAEEV-FKGDV---K 88
Query: 442 KRGHEIFRRIEQSRKPYIAAI 504
+ ++E+ RKP + AI
Sbjct: 89 DPAADPVVQMERCRKPIVGAI 109
>01_03_0096 + 12492502-12492708,12500878-12501294,12501397-12501816
Length = 347
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 319 ETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVV--SLSKRGHEI 459
+ NSG+ A +I CF+ G D S++ N T E + S RG E+
Sbjct: 49 KNNSGVAAGLIRLHFHDCFVRGCDASVLINGSTTERSAGPNASLRGFEV 97
>10_08_1007 -
22210263-22210400,22210506-22210547,22210626-22210727,
22212239-22212337,22212413-22212473,22213311-22213432,
22217700-22217786,22217958-22218041,22218141-22218220,
22218404-22218467,22218904-22218972,22219099-22219179,
22219626-22219694,22220108-22220140
Length = 376
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 504 TSSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQRLPAL 653
T +GGG ++ ++R+ + T F +PE LGL P G + L L
Sbjct: 137 TGIVMGGGAGVSIHGRFRVVTES--TVFAMPETALGLFPDIGASYFLSRL 184
>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
Length = 961
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 334 IEAAVIISGKPGCFIAGADISMIENCKTKEEVVSL--SKRGHE 456
+ A + G G F G D S + NC K V+ L S+RG E
Sbjct: 572 VGATDCVYGAQGAFYKGLDFSKVLNCDRKPAVLDLPPSRRGDE 614
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 658 EVRAGNRCVRPPPGKSPSMTSGSPNPVLESFTAMRYLHARAVSNPPPRQ 512
EVR R + PP ++ + S SP PV S + +PPPR+
Sbjct: 6 EVRYTARSITPPADRNGTSKSKSPTPVRRSTSRSPPPKKSDSRSPPPRR 54
>03_02_0344 - 7654551-7656149
Length = 532
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +3
Query: 459 IQKNRTITETVYCRNTSSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQ 638
+ + +T + R+ + GG ++ K R + D L V LG+ GG T
Sbjct: 5 VMERERLTAEMAFRDDARAAGGEWAPSIVIKIRRRLPDFARSVNLKYVKLGIRHGGSVTS 64
Query: 639 RLPAL 653
LP L
Sbjct: 65 YLPML 69
>12_02_0521 - 19955475-19956076,19957146-19958403
Length = 619
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 462 QKNRTITETVYCRNTSSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQR 641
+ N V +T++ GGG+ + RI K+ + G G+P+ L ++ G R R
Sbjct: 87 EPNHGSAAAVVAASTAASGGGGVVGGIGVGVRIVDKEKEVGNGIPK--LQVIRGSSRLDR 144
Query: 642 L 644
+
Sbjct: 145 M 145
>10_08_0760 + 20381117-20381350,20381451-20381639,20382317-20382910
Length = 338
Score = 27.9 bits (59), Expect = 7.6
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +1
Query: 283 VMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADIS-MIENCK----TKEEVVSLSKR 447
V +EVS V+ N G+ A ++ CF+ G D S +I++ K K+ + S R
Sbjct: 49 VQQEVSKAVS---ANPGLAAGLVRLHFHDCFVRGCDASVLIDSTKGNQAEKDAGPNTSLR 105
Query: 448 GHEIFRRIE 474
G E+ RI+
Sbjct: 106 GFEVVDRIK 114
>09_02_0103 - 4324578-4324639,4324848-4324983
Length = 65
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +2
Query: 116 ALKILRSRKELF---ISGVHSRKYAVPASQVHTKCKLVNGVY-VVTLDSP 253
A+ + RS L+ I+ HSR +V + VH +CKL+N Y +TL P
Sbjct: 14 AVPVARSSPPLYAVNITTSHSR--SVTSRFVHPRCKLINDNYSPITLSQP 61
>08_02_1168 +
24853895-24854216,24854264-24854286,24856102-24856181,
24856286-24856369,24856843-24857074
Length = 246
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 652 RAGNR-CVRPPPGKSPSMTSGSPNPVL 575
R G R RPPPG + S +G P+P L
Sbjct: 47 RCGRREARRPPPGAASSAAAGRPDPSL 73
>04_04_0658 +
27006245-27006305,27006447-27006523,27006798-27007225,
27007614-27007882,27007966-27008249
Length = 372
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 646 GNRCVRPPPGKSPSMTSGSPN 584
G+ CV PPP + P + +G P+
Sbjct: 329 GHECVMPPPDQYPLLPNGGPD 349
>01_06_0544 +
30118208-30118417,30118959-30119063,30119179-30119260,
30119415-30121250,30121327-30121445,30121563-30122006
Length = 931
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 634 VRPPPGKSPSMTSGSPNPVLESFTAMRYL 548
+RPPP +SP T G P F ++++
Sbjct: 6 LRPPPRRSPPTTIGEAYPDARGFATLKWI 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,637,951
Number of Sequences: 37544
Number of extensions: 351039
Number of successful extensions: 1212
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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