Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1642
(662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 83 2e-16
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 83 2e-16
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 83 2e-16
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 81 9e-16
AF045646-15|AAK29838.1| 284|Caenorhabditis elegans Enoyl-coa hy... 45 6e-05
AL132876-4|CAC48118.1| 256|Caenorhabditis elegans Hypothetical ... 44 1e-04
Z27079-6|CAA81594.1| 288|Caenorhabditis elegans Hypothetical pr... 40 0.001
U53339-3|AAA96199.1| 278|Caenorhabditis elegans Hypothetical pr... 36 0.034
Z92796-5|CAB07233.1| 518|Caenorhabditis elegans Hypothetical pr... 33 0.18
AF125459-14|AAD12843.1| 297|Caenorhabditis elegans Hypothetical... 32 0.42
U00050-8|AAM22062.1| 363|Caenorhabditis elegans Hypothetical pr... 31 0.73
U00050-7|AAA50696.1| 386|Caenorhabditis elegans Hypothetical pr... 31 0.73
Z54327-13|CAE48494.1| 619|Caenorhabditis elegans Hypothetical p... 30 1.3
Z54307-9|CAE48498.1| 619|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical pr... 27 9.0
U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short for... 27 9.0
U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form... 27 9.0
AC006748-6|AAF60516.1| 582|Caenorhabditis elegans Hypothetical ... 27 9.0
AC006748-5|AAX55685.1| 471|Caenorhabditis elegans Hypothetical ... 27 9.0
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 82.6 bits (195), Expect = 2e-16
Identities = 38/51 (74%), Positives = 41/51 (80%)
Frame = +3
Query: 510 SCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQRLPALTSI 662
SC+GGGLE ALAC YRIAV D KT LPEVMLGLLPG G TQRLP LT++
Sbjct: 162 SCMGGGLELALACHYRIAVNDKKTLLSLPEVMLGLLPGAGGTQRLPKLTTV 212
Score = 74.1 bits (174), Expect = 8e-14
Identities = 36/89 (40%), Positives = 57/89 (64%)
Frame = +1
Query: 247 LSNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEE 426
L N K N LN + E+ +++++++ I++ V++SGKP F+AGADI MI+ T
Sbjct: 74 LPNTKENVLNKALFAEMKATLDKLQSDESIKSIVVMSGKPNSFVAGADIQMIKAEGTATA 133
Query: 427 VVSLSKRGHEIFRRIEQSRKPYIAAIQAA 513
+LS+ G E F RIE+S+KP +AAI +
Sbjct: 134 TETLSREGQEQFFRIEKSQKPVVAAIMGS 162
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 82.6 bits (195), Expect = 2e-16
Identities = 38/51 (74%), Positives = 41/51 (80%)
Frame = +3
Query: 510 SCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQRLPALTSI 662
SC+GGGLE ALAC YRIAV D KT LPEVMLGLLPG G TQRLP LT++
Sbjct: 136 SCMGGGLELALACHYRIAVNDKKTLLSLPEVMLGLLPGAGGTQRLPKLTTV 186
Score = 74.1 bits (174), Expect = 8e-14
Identities = 36/89 (40%), Positives = 57/89 (64%)
Frame = +1
Query: 247 LSNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEE 426
L N K N LN + E+ +++++++ I++ V++SGKP F+AGADI MI+ T
Sbjct: 48 LPNTKENVLNKALFAEMKATLDKLQSDESIKSIVVMSGKPNSFVAGADIQMIKAEGTATA 107
Query: 427 VVSLSKRGHEIFRRIEQSRKPYIAAIQAA 513
+LS+ G E F RIE+S+KP +AAI +
Sbjct: 108 TETLSREGQEQFFRIEKSQKPVVAAIMGS 136
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 82.6 bits (195), Expect = 2e-16
Identities = 38/51 (74%), Positives = 41/51 (80%)
Frame = +3
Query: 510 SCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQRLPALTSI 662
SC+GGGLE ALAC YRIAV D KT LPEVMLGLLPG G TQRLP LT++
Sbjct: 162 SCMGGGLELALACHYRIAVNDKKTLLSLPEVMLGLLPGAGGTQRLPKLTTV 212
Score = 74.1 bits (174), Expect = 8e-14
Identities = 36/89 (40%), Positives = 57/89 (64%)
Frame = +1
Query: 247 LSNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEE 426
L N K N LN + E+ +++++++ I++ V++SGKP F+AGADI MI+ T
Sbjct: 74 LPNTKENVLNKALFAEMKATLDKLQSDESIKSIVVMSGKPNSFVAGADIQMIKAEGTATA 133
Query: 427 VVSLSKRGHEIFRRIEQSRKPYIAAIQAA 513
+LS+ G E F RIE+S+KP +AAI +
Sbjct: 134 TETLSREGQEQFFRIEKSQKPVVAAIMGS 162
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 80.6 bits (190), Expect = 9e-16
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = +3
Query: 510 SCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQRLPALTSI 662
SC+GGGLE ALAC YRIAV D KT GLPEV LG++PG G TQRLP LT++
Sbjct: 136 SCMGGGLEIALACHYRIAVNDKKTLLGLPEVTLGIMPGDGGTQRLPKLTTV 186
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/89 (35%), Positives = 53/89 (59%)
Frame = +1
Query: 247 LSNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEE 426
L N N LN + E++ ++ ++++ ++A V++SGKP F+AGADI M + KT
Sbjct: 48 LPNTTENVLNKALFAEMNETLDRLQSDQSVKAIVVMSGKPNSFVAGADIQMFKAEKTAAG 107
Query: 427 VVSLSKRGHEIFRRIEQSRKPYIAAIQAA 513
V +L + G + IE S+KP +AAI +
Sbjct: 108 VSNLLREGQKQLLTIELSQKPIVAAIMGS 136
>AF045646-15|AAK29838.1| 284|Caenorhabditis elegans Enoyl-coa
hydratase protein 5 protein.
Length = 284
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/49 (46%), Positives = 30/49 (61%)
Frame = +3
Query: 516 LGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQRLPALTSI 662
LGGGLE ALAC R+A + +K GL E L+PG G +QRL + +
Sbjct: 137 LGGGLELALACDIRVASQKAK--MGLVETKWALIPGAGGSQRLYRIVGV 183
Score = 31.5 bits (68), Expect = 0.55
Identities = 28/125 (22%), Positives = 50/125 (40%)
Frame = +1
Query: 259 KVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVVSL 438
K NSL M++ +++E++ + ++ S F +GAD+ +++E
Sbjct: 52 KKNSLGRVFMDQFREVLDELKYDPKTRVVILNSKCDNVFCSGADLKE-RKTMSQQEATRF 110
Query: 439 SKRGHEIFRRIEQSRKPYIAAIQAAV*EVD*RLLLHVNIALL*KTPKQDLDYQKSCWDFC 618
+ F +E+ +P IAAI L L +I + + K L K W
Sbjct: 111 VNGLRDSFTDVERLPQPVIAAIDGFALGGGLELALACDIRVASQKAKMGLVETK--WALI 168
Query: 619 PAVDG 633
P G
Sbjct: 169 PGAGG 173
>AL132876-4|CAC48118.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8A.4 protein.
Length = 256
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/61 (40%), Positives = 29/61 (47%)
Frame = +3
Query: 477 ITETVYCRNTSSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQRLPALT 656
IT+ V LGGG E AL C I FG PE+ +G +PG G TQR P
Sbjct: 92 ITKPVIAAVNGFALGGGTELALMCD--IVYAGENAIFGQPEITIGTIPGLGGTQRWPRYV 149
Query: 657 S 659
S
Sbjct: 150 S 150
>Z27079-6|CAA81594.1| 288|Caenorhabditis elegans Hypothetical
protein T05G5.6 protein.
Length = 288
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = +3
Query: 516 LGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQR 641
LGGG E A+ C I K FG PE+ +G +PG G TQR
Sbjct: 137 LGGGNELAMMCD--IIYAGEKARFGQPEINIGTIPGAGGTQR 176
>U53339-3|AAA96199.1| 278|Caenorhabditis elegans Hypothetical
protein F58A6.1 protein.
Length = 278
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 513 CLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQRLPAL 653
CLG L+ A AC R+A KD+ + EV +G+ G RLP +
Sbjct: 123 CLGAALDIATACDVRVATKDAV--LSVKEVDIGMAADVGTLNRLPKI 167
>Z92796-5|CAB07233.1| 518|Caenorhabditis elegans Hypothetical
protein H25K10.6 protein.
Length = 518
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +1
Query: 178 CRSSKPSTYKMQIGQWSLRSHFGLSNVKVNSLNTQVMEEVSNIVNEIE 321
C SK + Y + +W L N+ +SLN ++ + N+ ++E
Sbjct: 212 CDGSKITNYNAKFQKWQFLYELKLVNISYSSLNLSILSSIRNVRGDVE 259
>AF125459-14|AAD12843.1| 297|Caenorhabditis elegans Hypothetical
protein Y25C1A.13 protein.
Length = 297
Score = 31.9 bits (69), Expect = 0.42
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +3
Query: 507 SSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQRL 644
S CLG G++ AC R+A +D+ F + EV +GL G R+
Sbjct: 141 SHCLGAGIDLITACDIRVASQDAI--FSIREVDVGLAADIGTLNRI 184
>U00050-8|AAM22062.1| 363|Caenorhabditis elegans Hypothetical
protein F09F7.4b protein.
Length = 363
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 474 TITETVYCRNTSSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQRLPAL 653
T+ + C +GGG ++ ++R+A + KT +PE LGL P G + L L
Sbjct: 110 TLNKQYVCLIDGIVMGGGCGLSVNGRFRVATE--KTMLAMPETALGLFPDVGGSYFLSRL 167
>U00050-7|AAA50696.1| 386|Caenorhabditis elegans Hypothetical
protein F09F7.4a protein.
Length = 386
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 474 TITETVYCRNTSSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGRTQRLPAL 653
T+ + C +GGG ++ ++R+A + KT +PE LGL P G + L L
Sbjct: 133 TLNKQYVCLIDGIVMGGGCGLSVNGRFRVATE--KTMLAMPETALGLFPDVGGSYFLSRL 190
>Z54327-13|CAE48494.1| 619|Caenorhabditis elegans Hypothetical
protein F14F11.1h protein.
Length = 619
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 604 MTSGSPNPVLESFTAMRYLHARAVSNPPPRQLLVLRQYTVSVIV 473
+T P PV+ S AM Y HA+A S P ++ VL+ + + +V
Sbjct: 500 LTIALPVPVIVSNFAMFYSHAQARSKLPKKRRRVLQPHEIKPVV 543
>Z54307-9|CAE48498.1| 619|Caenorhabditis elegans Hypothetical
protein F14F11.1h protein.
Length = 619
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 604 MTSGSPNPVLESFTAMRYLHARAVSNPPPRQLLVLRQYTVSVIV 473
+T P PV+ S AM Y HA+A S P ++ VL+ + + +V
Sbjct: 500 LTIALPVPVIVSNFAMFYSHAQARSKLPKKRRRVLQPHEIKPVV 543
>Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical
protein F15C11.1 protein.
Length = 744
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 598 SGSPNPVLES-FTAMRYLHARAVSNPPPRQLLVLRQYTVSVIVRFF 464
S +PNP E+ AM+ + A PPPRQ+ VL ++ V + F
Sbjct: 554 STTPNPKNENPLLAMQKMWAET-EPPPPRQMPVLSKHQCGVCFKHF 598
>U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short form
protein.
Length = 715
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 598 SGSPNPVLES-FTAMRYLHARAVSNPPPRQLLVLRQYTVSVIVRFF 464
S +PNP E+ AM+ + A PPPRQ+ VL ++ V + F
Sbjct: 525 STTPNPKNENPLLAMQKMWAET-EPPPPRQMPVLSKHQCGVCFKHF 569
>U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form
protein.
Length = 744
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 598 SGSPNPVLES-FTAMRYLHARAVSNPPPRQLLVLRQYTVSVIVRFF 464
S +PNP E+ AM+ + A PPPRQ+ VL ++ V + F
Sbjct: 554 STTPNPKNENPLLAMQKMWAET-EPPPPRQMPVLSKHQCGVCFKHF 598
>AC006748-6|AAF60516.1| 582|Caenorhabditis elegans Hypothetical
protein Y39A3B.5a protein.
Length = 582
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 563 CERLQNRIWTTRSHA 607
C+ L +RIW TRSHA
Sbjct: 121 CKPLHSRIWQTRSHA 135
>AC006748-5|AAX55685.1| 471|Caenorhabditis elegans Hypothetical
protein Y39A3B.5c protein.
Length = 471
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 563 CERLQNRIWTTRSHA 607
C+ L +RIW TRSHA
Sbjct: 121 CKPLHSRIWQTRSHA 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,291,129
Number of Sequences: 27780
Number of extensions: 303305
Number of successful extensions: 1023
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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