Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1642
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.12 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/53 (22%), Positives = 30/53 (56%)
 Frame = +1

Query: 250  SNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIEN 408
            S+  +NS+  +  + ++++  +I TN+  + A  I GKP   +  +  S++++
Sbjct: 862  SSTSINSITVE-KDVINDVKTQITTNTPAKKATNIGGKPVAVVKSSAQSLLQS 913


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 588 QILFWSLSQQCDIYMQEQSLIHLLDSCLYCGNIRF-P*LFD-SSEYFMSSFRQT 433
           Q L +  +Q+ D Y      +++L  CLY  +    P L++  S  + ++F+QT
Sbjct: 289 QRLLYVYAQESDYYPDLNEWLYILSGCLYYFSTTINPILYNLMSIKYRNAFKQT 342


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 122 KILRSRKELFISGVHSRKYAV 184
           ++LR RKELFI+ V    Y +
Sbjct: 409 RLLRKRKELFIAIVCFVSYLI 429


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 122 KILRSRKELFISGVHSRKYAV 184
           ++LR RKELFI+ V    Y +
Sbjct: 462 RLLRKRKELFIAIVCFVSYLI 482


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 280 QVMEEVSNIVNEIETNSGIEAAVIISGKPG 369
           ++ +EVS+ + +I  N+   A V ISG  G
Sbjct: 169 EIKKEVSSYIKKIGYNTASVAFVPISGWHG 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,536
Number of Sequences: 438
Number of extensions: 3836
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)