Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1641
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    46   8e-06
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    29   0.54 
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||...    29   0.72 
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    28   1.3  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    27   3.8  
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch...    26   5.0  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.7  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.7  

>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 24/67 (35%), Positives = 37/67 (55%)
 Frame = +3

Query: 3   ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
           E H   N  ++L+GNKCDC   + +++    Q LAD+ G+   E SA  +    NV+  F
Sbjct: 108 EQHASENVYKILIGNKCDC-EDQRQVSFEQGQALADELGVKFLEASAKTNV---NVDEAF 163

Query: 183 LTLAHKL 203
            TLA ++
Sbjct: 164 FTLAREI 170


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 16/70 (22%), Positives = 32/70 (45%)
 Frame = -3

Query: 691 NLFIALIGRRAYGSPDRGSSTSLMDVGNTRTEPSSCLPSNPFKQRINICAC*QHAAAVGV 512
           N  + ++      +P+ GS  ++M  G+  T+ +S +P+NP +   N     QH   +  
Sbjct: 357 NHVLGIVFDSEQNNPENGSKVTVMMGGSAYTKNTSLIPTNPEEAVNNALKALQHTLKISS 416

Query: 511 RRDSMMLTLR 482
           +      TL+
Sbjct: 417 KPTLTNATLQ 426


>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 36  LVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHKL 203
           L GNK D       +    A+  A +  +  FETSA      +NV  +F  +A KL
Sbjct: 125 LAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSA---KTAENVNELFTAIAKKL 177


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 670 GRRAYGSPDRGSSTSLMDVGNTRTEPSSCLPS 575
           G RAY  P+R  + S  D    +T+P++  P+
Sbjct: 395 GNRAYNPPNRNQAFSARDSRQEKTQPTNASPA 426


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -1

Query: 111 YQLISE--HKWWLAWIQEYHSHIY 46
           +QL S+  + WWL++  + H H+Y
Sbjct: 102 HQLYSDWMYVWWLSYTAKQHGHVY 125


>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +3

Query: 27  PRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHKL 203
           P VLV NKCD    E  ++    ++LA        ETSA L     NVE  F +L   +
Sbjct: 115 PVVLVANKCDL-EAERVVSRAEGEQLAKSMHCLYVETSAKLRL---NVEEAFYSLVRTI 169


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = -2

Query: 614 RQYQDRAEQLPTVKSFQTTNKYMRMLTACRRCGRTKR----QHDVDITNQLLVLVLKNKI 447
           R+ Q   E+  +++  Q   +  R  TA R      R      DVD+ N  L + LKN+ 
Sbjct: 162 REAQSSIERSASLREKQAREEAERAATALREAELKHRLAQANADVDVANSKLDIALKNEA 221

Query: 446 A 444
           A
Sbjct: 222 A 222


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
 Frame = +3

Query: 129 FETSALLDSECDNVESIFLTLAHKL-----YSKQPLRVISVAGEVSKVWSHC 269
           F+ +  L SE DN   + + L         Y K PL+ I   G     W  C
Sbjct: 29  FQHALTLMSEADNSSDLLIPLISDFLIWFYYQKTPLKWIPFLGHFFNTWQSC 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,741
Number of Sequences: 5004
Number of extensions: 67177
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)