Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1641
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0685 - 5177340-5177363,5177770-5177865,5177991-5178053,517... 55 7e-08
07_01_0926 - 7775536-7775616,7775695-7775787,7775903-7775965,777... 51 1e-06
03_06_0475 + 34193951-34194023,34195414-34195486,34195572-341956... 51 1e-06
05_05_0118 - 22504483-22504566,22504650-22504742,22504852-225049... 50 2e-06
01_05_0340 - 21139885-21139978,21140169-21140272,21140379-211405... 46 3e-05
02_05_0161 + 26384079-26384086,26386173-26386226,26386376-263864... 38 0.009
01_01_0565 - 4159946-4160042,4160140-4160243,4160378-4160533,416... 38 0.009
09_06_0029 + 20336634-20336881,20337737-20338208 38 0.011
02_04_0402 + 22618998-22619043,22619206-22619345,22620067-226201... 37 0.020
05_01_0037 - 256891-256998,257347-257502,257753-257824,258737-25... 36 0.035
05_01_0036 + 253734-253904,255216-255707 34 0.11
08_02_1318 - 26111031-26111276,26112139-26112427,26112936-261130... 34 0.14
03_01_0365 - 2839190-2839251,2839637-2839694,2839946-2840032,284... 33 0.19
10_03_0038 - 7297210-7297248,7297361-7297429,7297524-7297731,729... 32 0.43
01_03_0177 + 13470784-13471609,13472263-13472423,13472575-134727... 31 0.75
05_06_0082 - 25425050-25425479,25426551-25426783 31 1.3
02_01_0731 - 5471795-5471811,5471953-5472035,5472235-5472331,547... 30 2.3
01_05_0091 + 18048595-18050559 29 4.0
02_05_1236 + 35141404-35142731,35142753-35143089,35143228-351433... 28 7.0
>07_01_0685 -
5177340-5177363,5177770-5177865,5177991-5178053,
5178138-5178232,5178941-5179028,5179372-5179444,
5179866-5179920,5180355-5180463
Length = 200
Score = 54.8 bits (126), Expect = 7e-08
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +3
Query: 3 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
E H N ++LVGNK D T ++T Q+LAD+YGM FETSA + NVE +F
Sbjct: 118 EQHASDNVNKILVGNKVDMDTKRV-VSTAQGQKLADEYGMKFFETSAKTN---QNVEQVF 173
Query: 183 LTLAHKLYSKQPL-RVISVAGEV 248
T+A + KQ L ++ A E+
Sbjct: 174 FTIARDI--KQRLTETVAAAAEL 194
>07_01_0926 -
7775536-7775616,7775695-7775787,7775903-7775965,
7776326-7776423,7776661-7776761,7776865-7776937,
7778575-7778647
Length = 193
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/67 (38%), Positives = 38/67 (56%)
Frame = +3
Query: 3 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
E H N ++LVGNK D + + T+ Q LAD+YG+ FETSA + NVE +F
Sbjct: 92 EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL---NVEQVF 148
Query: 183 LTLAHKL 203
++A +
Sbjct: 149 FSIARDI 155
>03_06_0475 +
34193951-34194023,34195414-34195486,34195572-34195672,
34195912-34196009,34196326-34196388,34196534-34196626,
34196697-34196774
Length = 192
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/67 (38%), Positives = 38/67 (56%)
Frame = +3
Query: 3 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
E H N ++LVGNK D + + T+ Q LAD+YG+ FETSA + NVE +F
Sbjct: 92 EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL---NVEQVF 148
Query: 183 LTLAHKL 203
++A +
Sbjct: 149 FSIARDI 155
>05_05_0118 -
22504483-22504566,22504650-22504742,22504852-22504914,
22505048-22505145,22505378-22505478,22505581-22505653,
22505872-22505910,22506946-22507018
Length = 207
Score = 50.4 bits (115), Expect = 2e-06
Identities = 26/67 (38%), Positives = 37/67 (55%)
Frame = +3
Query: 3 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
E H N ++LVGNK D + + T Q LAD+YG+ FETSA + NVE +F
Sbjct: 105 EQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNL---NVEQVF 161
Query: 183 LTLAHKL 203
++A +
Sbjct: 162 FSIARDI 168
>01_05_0340 -
21139885-21139978,21140169-21140272,21140379-21140534,
21140622-21140693,21140782-21140829,21140923-21140970,
21141807-21141879,21142333-21142346
Length = 202
Score = 46.0 bits (104), Expect = 3e-05
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Frame = +3
Query: 21 NAPRVLVGNKCDCGTPESRLATTYA-QRLADKYGMPLFETSALLDSECDNVESIFLTLAH 197
N ++LVGNKCD E+R+ + A + LAD+ G+P ETSA + NVE F+T+A
Sbjct: 113 NVNKLLVGNKCDLA--ENRVVSYEAGKALADEIGIPFLETSA---KDATNVEKAFMTMAG 167
Query: 198 KLYSKQPLRVISVAGEVSKVWSHCQDRGKLVA 293
++ ++ + + A + + V Q RG+ VA
Sbjct: 168 EIKNRMASQPATNASKPATV----QMRGQPVA 195
>02_05_0161 +
26384079-26384086,26386173-26386226,26386376-26386448,
26386775-26386822,26386906-26386953,26387990-26388061,
26388156-26388311,26388428-26388531,26388628-26388724
Length = 219
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +3
Query: 21 NAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLA 194
N ++LVGNK D T +++ A+ AD+ G+P ETSA NVE F+ +A
Sbjct: 129 NVNKLLVGNKSDL-TANKVVSSETAKAFADEMGIPFMETSA---KNATNVEQAFMAMA 182
>01_01_0565 -
4159946-4160042,4160140-4160243,4160378-4160533,
4160629-4160700,4161796-4161843,4161923-4161970,
4162295-4162367,4163188-4163201
Length = 203
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +3
Query: 21 NAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLA 194
N ++LVGNK D T +++ A+ AD+ G+P ETSA NVE F+ +A
Sbjct: 113 NVNKLLVGNKSDL-TANKVVSSETAKAFADEMGIPFMETSA---KNATNVEQAFMAMA 166
>09_06_0029 + 20336634-20336881,20337737-20338208
Length = 239
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +3
Query: 36 LVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHKLYSKQ 215
L+GNK D +A A R A++ G+ E SAL DNV+ FLTL ++++
Sbjct: 132 LIGNKADMPAGRREVAADEAARFAEEQGLFFSEASAL---SGDNVDRAFLTLLEEIFAVV 188
Query: 216 PLRVISV 236
R + +
Sbjct: 189 SRRALEL 195
>02_04_0402 +
22618998-22619043,22619206-22619345,22620067-22620149,
22620234-22620438,22620524-22620592,22621099-22621188
Length = 210
Score = 36.7 bits (81), Expect = 0.020
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +3
Query: 9 HGLMNAPRVLVGNKCDCGTPESRLATTY--AQRLADKYGMPLFETSALLDSECDNVESIF 182
H N +L+GNKCD R A +Y ++ A ++G+ E SA NVE F
Sbjct: 107 HANANMTVMLIGNKCDL---SHRRAVSYEEGEQFAKEHGLVFMEASA---KTAQNVEEAF 160
Query: 183 LTLAHKLYSKQPLRVISVAGE 245
+ A +Y K V V+ E
Sbjct: 161 IKTAGTIYKKIQDGVFDVSNE 181
>05_01_0037 -
256891-256998,257347-257502,257753-257824,258737-258784,
259071-259143,259237-259250
Length = 156
Score = 35.9 bits (79), Expect = 0.035
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +3
Query: 30 RVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLA 194
++LVGNKCD + T A+ A+ G+ ETSA E NVE FLT++
Sbjct: 100 KLLVGNKCDL-VDSKVVDTEEAKAFAESLGISFLETSA---KESINVEEAFLTMS 150
>05_01_0036 + 253734-253904,255216-255707
Length = 220
Score = 34.3 bits (75), Expect = 0.11
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +3
Query: 9 HGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLT 188
H N +LVGNK D + +AT A + A+ G+ ETSAL E NVE F
Sbjct: 115 HADANIRIMLVGNKTDLKHLRA-VATDDAHKFAEAEGLSYIETSAL---EATNVEEAFQL 170
Query: 189 LAHKLY---SKQPL 221
+ +Y SK+P+
Sbjct: 171 ILGDIYRAISKKPV 184
>08_02_1318 -
26111031-26111276,26112139-26112427,26112936-26113036,
26113628-26113878,26114842-26114865,26115793-26116129
Length = 415
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +3
Query: 3 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
++H ++LVGNKCD + + LA+ G+ ETSAL + NV + F
Sbjct: 120 KAHSDTTVAKMLVGNKCDLDNIR-EVPVEEGKALAEAEGLFFMETSAL---DSTNVRTAF 175
Query: 183 LTLAHKLYSKQPLRVIS 233
+ ++YS ++++
Sbjct: 176 EIVIKEIYSNVSRKILN 192
>03_01_0365 -
2839190-2839251,2839637-2839694,2839946-2840032,
2840117-2840206,2840575-2840650,2840877-2840971,
2841090-2841173,2841270-2841343,2841803-2841827
Length = 216
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +3
Query: 3 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
+ HG + VLVGNK D +++ AQ A+K M ETSA DN+ +F
Sbjct: 121 QKHGSPDIIMVLVGNKADL-HENRHVSSQEAQEYAEKNNMVFIETSA---KTADNINQVF 176
>10_03_0038 -
7297210-7297248,7297361-7297429,7297524-7297731,
7297829-7297911,7298859-7298998,7299132-7299183
Length = 196
Score = 32.3 bits (70), Expect = 0.43
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +3
Query: 33 VLVGNKCDCGTPESRLATTY--AQRLADKYGMPLFETSALLDSECDNVESIFLTLAHKLY 206
+L+GNKCD R +Y ++ A ++G+ E SA NVE F+ A ++
Sbjct: 118 ILIGNKCDL---SHRRVVSYQEGEQFAKEHGLLFMEASA---KTAHNVEKAFILAARTVH 171
Query: 207 SKQPLRVISVAGEVSKVWSH 266
K VI++ E ++ H
Sbjct: 172 KKIEDGVINLLDESTEEEKH 191
>01_03_0177 +
13470784-13471609,13472263-13472423,13472575-13472785,
13473092-13473161,13489257-13489410,13489532-13489777
Length = 555
Score = 31.5 bits (68), Expect = 0.75
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 673 IGRRAYGSPDRGSSTSLMDVGNTRTEPSSCLPSNPFKQRINICAC*QH 530
+G +G +G T+ D+ R P+S FK I + AC QH
Sbjct: 319 LGEGGFGHVYKGRLTTNQDIAVKRLAPNSAQGFKEFKNEIKLIACLQH 366
>05_06_0082 - 25425050-25425479,25426551-25426783
Length = 220
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +3
Query: 33 VLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHKLYSK 212
+L+GNK D + ++T + A+ M ETSAL + DN + LT +++ +K
Sbjct: 126 MLIGNKSDLRHLVA-VSTEDGKEFAEAESMYFMETSALDATNVDNAFAEVLTQIYQIVNK 184
Query: 213 QPL 221
+P+
Sbjct: 185 KPV 187
>02_01_0731 -
5471795-5471811,5471953-5472035,5472235-5472331,
5472460-5472652,5472782-5472849,5473345-5473639
Length = 250
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 501 LSLRTPTAAACCQHAHIFIRCLKGFDGRQLLGSV 602
L + T A+C +H +F+ CL DG++ + V
Sbjct: 121 LDVVADTKASCYRHGGMFMECLSSSDGKEAIAKV 154
>01_05_0091 + 18048595-18050559
Length = 654
Score = 29.1 bits (62), Expect = 4.0
Identities = 9/34 (26%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = -1
Query: 129 IEAC--HIYQLISEHKWWLAWIQEYHSHIYCPQG 34
+ AC ++Y+L+S+ W+++ + + +++C QG
Sbjct: 122 LSACGRNVYELVSDFDWYVSLLTDMGRNLHCAQG 155
>02_05_1236 +
35141404-35142731,35142753-35143089,35143228-35143305,
35143395-35143703,35144449-35144572,35144620-35144789
Length = 781
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 129 FETSALLDSECDNVESIFLTLAHKLYSKQPLRVISVAGEVSKVWSHCQDRGK 284
F S++ S V I +A ++ ++QP R VAGE S + S Q+R K
Sbjct: 639 FVLSSVKRSRSPQVNLITEVMASEITAQQPRRKKKVAGEFSGLCSSWQERCK 690
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,330,540
Number of Sequences: 37544
Number of extensions: 423404
Number of successful extensions: 907
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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