Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1641
(756 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical pr... 80 1e-15
AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 46 2e-05
AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family pr... 45 5e-05
AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein. 45 5e-05
U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein. 41 0.001
U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein. 41 0.001
U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family pro... 41 0.001
U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family pro... 41 0.001
AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein. 41 0.001
Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical pr... 38 0.008
AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical ... 38 0.010
AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein. 38 0.010
AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family pr... 36 0.023
AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein. 36 0.023
Z54236-8|CAA90983.1| 188|Caenorhabditis elegans Hypothetical pr... 36 0.031
U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family prot... 35 0.054
Z73103-10|CAA97427.2| 205|Caenorhabditis elegans Hypothetical p... 33 0.17
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 32 0.38
Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical pr... 32 0.51
M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein pro... 32 0.51
AF026204-3|AAB71253.1| 424|Caenorhabditis elegans Hypothetical ... 31 0.67
Z81039-10|CAB02777.2| 181|Caenorhabditis elegans Hypothetical p... 30 1.5
AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical ... 29 3.6
AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 28 6.2
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical... 28 6.2
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ... 28 6.2
>Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical
protein F43D9.2 protein.
Length = 307
Score = 80.2 bits (189), Expect = 1e-15
Identities = 43/80 (53%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 ESHGLMN---APRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVE 173
E HGL+ PR+L+GNKCD +R++T AQ AD+ M LFETSA L SE D+VE
Sbjct: 200 EKHGLVGDSEVPRILIGNKCDVECT-NRVSTDEAQMFADRNNMALFETSAKLASEADHVE 258
Query: 174 SIFLTLAHKLYSKQPLRVIS 233
SIFLTL HKL +P+ V S
Sbjct: 259 SIFLTLLHKLQQSKPMHVQS 278
>AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family
protein 1 protein.
Length = 205
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/64 (42%), Positives = 37/64 (57%)
Frame = +3
Query: 21 NAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHK 200
N ++LVGNKCD T + + T AQ A + G+P ETSA NVE FLT+A +
Sbjct: 116 NVNKLLVGNKCDL-TAKRAVETQAAQDYAGQLGIPFLETSA---KSSTNVEQAFLTMASE 171
Query: 201 LYSK 212
+ S+
Sbjct: 172 IKSR 175
>AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family
protein 8 protein.
Length = 211
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/83 (31%), Positives = 40/83 (48%)
Frame = +3
Query: 3 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
E H + R+++GNKCD ++ ++LA +YG ETSA + N++ F
Sbjct: 107 EEHAASDVERMIIGNKCDI-EERREVSRDRGEQLAIEYGTKFLETSAKANL---NIDEAF 162
Query: 183 LTLAHKLYSKQPLRVISVAGEVS 251
TLA + SK + G VS
Sbjct: 163 FTLARDIKSKMEQNEMRAGGSVS 185
>AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein.
Length = 211
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/83 (31%), Positives = 40/83 (48%)
Frame = +3
Query: 3 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
E H + R+++GNKCD ++ ++LA +YG ETSA + N++ F
Sbjct: 107 EEHAASDVERMIIGNKCDI-EERREVSRDRGEQLAIEYGTKFLETSAKANL---NIDEAF 162
Query: 183 LTLAHKLYSKQPLRVISVAGEVS 251
TLA + SK + G VS
Sbjct: 163 FTLARDIKSKMEQNEMRAGGSVS 185
>U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +3
Query: 21 NAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHK 200
NA VLVGNKCD + E ++ ++LAD+ G+ FETSA E NV+++F L
Sbjct: 127 NAQVVLVGNKCDMDS-ERVVSMDRGRQLADQLGLEFFETSA---KENINVKAVFEKLVEI 182
Query: 201 LYSK 212
+ K
Sbjct: 183 ICDK 186
>U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +3
Query: 21 NAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHK 200
NA VLVGNKCD + E ++ ++LAD+ G+ FETSA E NV+++F L
Sbjct: 127 NAQVVLVGNKCDMDS-ERVVSMDRGRQLADQLGLEFFETSA---KENINVKAVFEKLVEI 182
Query: 201 LYSK 212
+ K
Sbjct: 183 ICDK 186
>U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family
protein 3, isoform b protein.
Length = 219
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +3
Query: 21 NAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHK 200
NA VLVGNKCD + E ++ ++LAD+ G+ FETSA E NV+++F L
Sbjct: 127 NAQVVLVGNKCDMDS-ERVVSMDRGRQLADQLGLEFFETSA---KENINVKAVFEKLVEI 182
Query: 201 LYSK 212
+ K
Sbjct: 183 ICDK 186
>U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family
protein 3, isoform a protein.
Length = 233
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +3
Query: 21 NAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHK 200
NA VLVGNKCD + E ++ ++LAD+ G+ FETSA E NV+++F L
Sbjct: 141 NAQVVLVGNKCDMDS-ERVVSMDRGRQLADQLGLEFFETSA---KENINVKAVFEKLVEI 196
Query: 201 LYSK 212
+ K
Sbjct: 197 ICDK 200
>AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein.
Length = 219
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +3
Query: 21 NAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHK 200
NA VLVGNKCD + E ++ ++LAD+ G+ FETSA E NV+++F L
Sbjct: 127 NAQVVLVGNKCDMDS-ERVVSMDRGRQLADQLGLEFFETSA---KENINVKAVFEKLVEI 182
Query: 201 LYSK 212
+ K
Sbjct: 183 ICDK 186
>Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical
protein F11A5.3 protein.
Length = 201
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/74 (33%), Positives = 35/74 (47%)
Frame = +3
Query: 9 HGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLT 188
HG +L+GNK D + T + A K G+ ETSA + +VE F+
Sbjct: 107 HGHPEMVIMLIGNKSDLKAVRD-VTTEEGEAFAKKNGLTFMETSAKANK---HVEKAFVN 162
Query: 189 LAHKLYSKQPLRVI 230
AH++Y K L VI
Sbjct: 163 TAHEIYKKLKLGVI 176
>AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical
protein Y87G2A.4 protein.
Length = 215
Score = 37.5 bits (83), Expect = 0.010
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Frame = +3
Query: 9 HGLMNAPRVLV-GNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFL 185
H P +++ GNK D +++T A++LAD+ G+P FETSA + + L
Sbjct: 117 HAYCEQPDIIICGNKADLEN-RRQVSTARAKQLADQLGLPYFETSACTSTNVEKSVDCLL 175
Query: 186 TLAHKLY------SKQPL---RVISVAGEVSKVWSHC 269
L + S PL R +S+ G+ S S+C
Sbjct: 176 DLVMQRIQQSVETSSLPLSECRGVSLDGDPSAASSYC 212
>AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein.
Length = 215
Score = 37.5 bits (83), Expect = 0.010
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Frame = +3
Query: 9 HGLMNAPRVLV-GNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFL 185
H P +++ GNK D +++T A++LAD+ G+P FETSA + + L
Sbjct: 117 HAYCEQPDIIICGNKADLEN-RRQVSTARAKQLADQLGLPYFETSACTSTNVEKSVDCLL 175
Query: 186 TLAHKLY------SKQPL---RVISVAGEVSKVWSHC 269
L + S PL R +S+ G+ S S+C
Sbjct: 176 DLVMQRIQQSVETSSLPLSECRGVSLDGDPSAASSYC 212
>AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family
protein 37 protein.
Length = 196
Score = 36.3 bits (80), Expect = 0.023
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +3
Query: 36 LVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHKL 203
LVGNKCD P + + T +RLA+ Y +P ETSA NV+ FL LA ++
Sbjct: 113 LVGNKCDL--PRA-VPTDEGKRLAEAYQIPFMETSAKTGF---NVDRAFLGLAERM 162
>AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein.
Length = 196
Score = 36.3 bits (80), Expect = 0.023
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +3
Query: 36 LVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHKL 203
LVGNKCD P + + T +RLA+ Y +P ETSA NV+ FL LA ++
Sbjct: 113 LVGNKCDL--PRA-VPTDEGKRLAEAYQIPFMETSAKTGF---NVDRAFLGLAERM 162
>Z54236-8|CAA90983.1| 188|Caenorhabditis elegans Hypothetical
protein C27B7.8 protein.
Length = 188
Score = 35.9 bits (79), Expect = 0.031
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +3
Query: 27 PRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHKLY 206
P +LVGNKCD E + Q LA ++G ETSA NV +F L ++
Sbjct: 110 PMILVGNKCDL-EDERVVGKDQGQNLARQFGSAFLETSAKAKI---NVSEVFYDLVRQIN 165
Query: 207 SKQP 218
+ P
Sbjct: 166 RRYP 169
>U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family protein
10 protein.
Length = 201
Score = 35.1 bits (77), Expect = 0.054
Identities = 19/72 (26%), Positives = 39/72 (54%)
Frame = +3
Query: 3 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
+ H + ++++GNKCD + ++ +++A +G+ ETSA L+ +V++ F
Sbjct: 108 DEHASEDVVKMILGNKCDM-SDRRVVSRERGEKIAQDHGISFHETSAKLNV---HVDTAF 163
Query: 183 LTLAHKLYSKQP 218
LA + +K P
Sbjct: 164 YDLAEAILAKMP 175
>Z73103-10|CAA97427.2| 205|Caenorhabditis elegans Hypothetical
protein C08F8.7 protein.
Length = 205
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +3
Query: 27 PRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
P +LVGNK D ++ + A A+K +P FETSA L+ NV +F
Sbjct: 109 PMILVGNKSDLAETR-QVDESEAHNFAEKLKIPYFETSARLN---QNVSEVF 156
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 32.3 bits (70), Expect = 0.38
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 27 PRVLVGNKCDC--GTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHK 200
P +LVGNK D TP S +A T +A G+ ETSAL S N+++ L L +
Sbjct: 568 PIILVGNKVDMRISTPGS-VAKTDGASMAAAMGVLFMETSALDGS---NIDNAMLALTRE 623
Query: 201 LYSKQPLRVIS 233
L + + + + S
Sbjct: 624 LMAVEDVEIRS 634
>Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical
protein ZK792.6 protein.
Length = 184
Score = 31.9 bits (69), Expect = 0.51
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +3
Query: 21 NAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHK 200
+ P VLVGNKCD + T A YG+P +TSA V+ F TL +
Sbjct: 108 DVPMVLVGNKCDLSSRSVDFRT--VSETAKGYGIPNVDTSAKTRM---GVDEAFYTLVRE 162
Query: 201 L 203
+
Sbjct: 163 I 163
>M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein
protein.
Length = 187
Score = 31.9 bits (69), Expect = 0.51
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +3
Query: 21 NAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHK 200
+ P VLVGNKCD + T A YG+P +TSA V+ F TL +
Sbjct: 111 DVPMVLVGNKCDLSSRSVDFRT--VSETAKGYGIPNVDTSAKTRM---GVDEAFYTLVRE 165
Query: 201 L 203
+
Sbjct: 166 I 166
>AF026204-3|AAB71253.1| 424|Caenorhabditis elegans Hypothetical
protein C30E1.8 protein.
Length = 424
Score = 31.5 bits (68), Expect = 0.67
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +3
Query: 3 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFE----TSALLDSECDNV 170
E + L+ RV VGN+ + G P S LA TY Q + +FE + L D+E N+
Sbjct: 30 EDYELLEQIRVFVGNEYENGIPLSTLAFTY-QSPSQLIPFAVFEKAYINTTLGDNELKNL 88
Query: 171 ESI-FLTLAHK 200
+ ++T +H+
Sbjct: 89 SGVMYITSSHQ 99
>Z81039-10|CAB02777.2| 181|Caenorhabditis elegans Hypothetical
protein C25D7.7 protein.
Length = 181
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 12 GLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSA 143
G N P +LVGNKCD + + ++ + LA+ + P E SA
Sbjct: 105 GSENVPILLVGNKCDL-SHQRQVRSEEGLALAESWSCPFTECSA 147
>AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical
protein 4R79.2 protein.
Length = 395
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 36 LVGNKCDCGTPESRLATTY--AQRLADKYGMPLFETSA 143
LVGNK D + + Y A++LA ++ +P FETSA
Sbjct: 313 LVGNKMDLFGSDIARSAVYRAAEKLAVEFKIPFFETSA 350
>AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical
protein Y47D3A.25 protein.
Length = 209
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 30 RVLVGNKCDCGTPESRLA-TTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
+VLVGNKC+ E R+ + A+ A + FETSA E NVE +F
Sbjct: 117 KVLVGNKCE--ENERRVVLESDARNYAQSMNISFFETSA---KEDKNVEPMF 163
>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
protein Y18D10A.13 protein.
Length = 2417
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +1
Query: 409 VKLYMN*F*IALAILFFRTKTNS*FVMSTSCCLFVRPQRRHAVNMRIYLFVV*KDLTVGS 588
V+ Y+ F +A L TN FV CLFV +R ++N R+Y +++ +
Sbjct: 248 VQRYLLDFLVAAFPLDSTNLTNEDFVQLLRRCLFVVLRRDMSLNRRLYTWLINRSGETKG 307
Query: 589 CSALS 603
S LS
Sbjct: 308 VSGLS 312
>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
protein protein.
Length = 2417
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +1
Query: 409 VKLYMN*F*IALAILFFRTKTNS*FVMSTSCCLFVRPQRRHAVNMRIYLFVV*KDLTVGS 588
V+ Y+ F +A L TN FV CLFV +R ++N R+Y +++ +
Sbjct: 248 VQRYLLDFLVAAFPLDSTNLTNEDFVQLLRRCLFVVLRRDMSLNRRLYTWLINRSGETKG 307
Query: 589 CSALS 603
S LS
Sbjct: 308 VSGLS 312
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,707,996
Number of Sequences: 27780
Number of extensions: 377311
Number of successful extensions: 807
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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