Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1641
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   4.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   4.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   4.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.4  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 482 NQLLVLVLKNKIAKAIQN*FMYN 414
           N+  +LVL NK+ K + N F ++
Sbjct: 374 NREYILVLSNKMQKMVNNDFNFD 396


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 482 NQLLVLVLKNKIAKAIQN*FMYN 414
           N+  +LVL NK+ K + N F ++
Sbjct: 374 NREYILVLSNKMQKMVNNDFNFD 396


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 482 NQLLVLVLKNKIAKAIQN*FMYN 414
           N+  +LVL NK+ K + N F ++
Sbjct: 374 NREYILVLSNKMQKMVNNDFNFD 396


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 236 HTNNSQWLFRV 204
           +TNNS+W F+V
Sbjct: 211 YTNNSKWDFKV 221


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -1

Query: 618 TSAIPGQSRAAAYRQILSNNE*IYAHVDSMPPLWA 514
           T+AIP     A YR    +   +    ++ P  WA
Sbjct: 270 TAAIPTSENPADYRYFCPDGSKVPIDANTKPCTWA 304


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -1

Query: 618 TSAIPGQSRAAAYRQILSNNE*IYAHVDSMPPLWA 514
           T+AIP     A YR    +   +    ++ P  WA
Sbjct: 270 TAAIPTSENPADYRYFCPDGSKVPIDANTKPCTWA 304


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -1

Query: 618 TSAIPGQSRAAAYRQILSNNE*IYAHVDSMPPLWA 514
           T+AIP     A YR    +   +    ++ P  WA
Sbjct: 270 TAAIPTSENPADYRYFCPDGSKVPIDANTKPCTWA 304


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 82   ASLDSGVPQSHLLPTRTL 29
            A++    PQ H+LP +TL
Sbjct: 1003 ANIKQQSPQQHVLPGKTL 1020


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,173
Number of Sequences: 438
Number of extensions: 4922
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)