Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1641
(756 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09900.1 68416.m01180 Ras-related GTP-binding protein, putati... 52 5e-07
At5g03520.1 68418.m00308 Ras-related GTP-binding protein, putati... 51 7e-07
At3g53610.2 68416.m05922 Ras-related GTP-binding protein, putati... 49 3e-06
At3g53610.1 68416.m05921 Ras-related GTP-binding protein, putati... 49 3e-06
At3g46060.1 68416.m04984 Ras-related protein (ARA-3) / small GTP... 49 4e-06
At5g59840.1 68418.m07503 Ras-related GTP-binding family protein ... 48 7e-06
At3g12160.1 68416.m01516 Ras-related GTP-binding family protein ... 44 1e-04
At4g17530.1 68417.m02622 Ras-related GTP-binding protein, putati... 43 3e-04
At3g11730.1 68416.m01439 Ras-related GTP-binding protein, putati... 40 0.001
At5g47200.1 68418.m05820 Ras-related GTP-binding protein, putati... 38 0.007
At4g17170.1 68417.m02583 Rab2-like GTP-binding protein (RAB2) id... 38 0.007
At4g17160.1 68417.m02582 Ras-related GTP-binding protein, putati... 36 0.022
At1g02130.1 68414.m00139 Ras-related protein (ARA-5) / small GTP... 36 0.022
At1g06400.1 68414.m00677 Ras-related GTP-binding protein (ARA-2)... 36 0.029
At4g35860.1 68417.m05093 Ras-related GTP-binding protein, putati... 35 0.067
At2g43130.1 68415.m05356 Ras-related protein (ARA-4) / small GTP... 34 0.089
At2g31680.1 68415.m03867 Ras-related GTP-binding protein, putati... 34 0.12
At1g05810.1 68414.m00608 Ras-related protein (ARA-1) (ARA) / sma... 32 0.47
At1g28550.1 68414.m03513 Ras-related GTP-binding protein, putati... 31 0.62
At3g07410.1 68416.m00883 Ras-related GTP-binding family protein ... 31 1.1
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 29 2.5
At3g54860.1 68416.m06078 vacuolar protein sorting protein, putat... 29 4.4
At1g01200.1 68414.m00034 Ras-related GTP-binding protein, putati... 29 4.4
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 28 7.7
>At3g09900.1 68416.m01180 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:871510 from [Pisum
sativum]; contains Pfam profile: PF00071 Ras family
Length = 218
Score = 51.6 bits (118), Expect = 5e-07
Identities = 33/94 (35%), Positives = 47/94 (50%)
Frame = +3
Query: 3 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
E H + ++LVGNK D + + T+ Q LAD+YG+ FETSA + NVE +F
Sbjct: 114 EQHASDSVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN---QNVEQVF 170
Query: 183 LTLAHKLYSKQPLRVISVAGEVSKVWSHCQDRGK 284
L++A + KQ L E + QD K
Sbjct: 171 LSIAKDI--KQRLTESDTKAEPQGIKITKQDANK 202
>At5g03520.1 68418.m00308 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:871508 from [Pisum
sativum]
Length = 216
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/64 (40%), Positives = 38/64 (59%)
Frame = +3
Query: 3 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
E H N ++LVGNK D + + T Q LAD+YG+ FETSA + NVE++F
Sbjct: 114 EQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNL---NVENVF 170
Query: 183 LTLA 194
+++A
Sbjct: 171 MSIA 174
>At3g53610.2 68416.m05922 Ras-related GTP-binding protein, putative
similar to Ras-related protein ARA-3 SP:P28186 from
[Arabidopsis thaliana]
Length = 216
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/93 (33%), Positives = 46/93 (49%)
Frame = +3
Query: 3 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
E H + ++LVGNK D + + + Q LAD+YGM FETSA + NVE +F
Sbjct: 114 EQHASDSVNKILVGNKADMDESKRAVPKSKGQALADEYGMKFFETSAKTNL---NVEEVF 170
Query: 183 LTLAHKLYSKQPLRVISVAGEVSKVWSHCQDRG 281
++A + KQ L E + + D+G
Sbjct: 171 FSIAKDI--KQRLADTDARAEPQTIKINQSDQG 201
>At3g53610.1 68416.m05921 Ras-related GTP-binding protein, putative
similar to Ras-related protein ARA-3 SP:P28186 from
[Arabidopsis thaliana]
Length = 216
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/93 (33%), Positives = 46/93 (49%)
Frame = +3
Query: 3 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
E H + ++LVGNK D + + + Q LAD+YGM FETSA + NVE +F
Sbjct: 114 EQHASDSVNKILVGNKADMDESKRAVPKSKGQALADEYGMKFFETSAKTNL---NVEEVF 170
Query: 183 LTLAHKLYSKQPLRVISVAGEVSKVWSHCQDRG 281
++A + KQ L E + + D+G
Sbjct: 171 FSIAKDI--KQRLADTDARAEPQTIKINQSDQG 201
>At3g46060.1 68416.m04984 Ras-related protein (ARA-3) / small
GTP-binding protein, putative identical to SP|P28186
Ras-related protein ARA-3 {Arabidopsis thaliana};
contains Pfam profile: PF00071 Ras family
Length = 216
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = +3
Query: 3 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
E H N ++LVGNK D + + T Q LAD+YG+ FETSA + NVE +F
Sbjct: 114 EQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNL---NVEEVF 170
Query: 183 LTLAHKL 203
++ +
Sbjct: 171 FSIGRDI 177
>At5g59840.1 68418.m07503 Ras-related GTP-binding family protein
contains Pfam profile: PF00071 Ras family
Length = 216
Score = 48.0 bits (109), Expect = 7e-06
Identities = 25/64 (39%), Positives = 36/64 (56%)
Frame = +3
Query: 3 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
E H N ++LVGNK D + + + Q LAD+YG+ FETSA + NVE +F
Sbjct: 114 EQHASDNVNKILVGNKADMDESKRAVPKSKGQALADEYGIKFFETSAKTNL---NVEEVF 170
Query: 183 LTLA 194
++A
Sbjct: 171 FSIA 174
>At3g12160.1 68416.m01516 Ras-related GTP-binding family protein
similar to ras-related GTP-binding protein RGP1
SP:P25766 from [Oryza sativa];contains Pfam profile:
PF00071 Ras family
Length = 222
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/66 (39%), Positives = 37/66 (56%)
Frame = +3
Query: 9 HGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLT 188
H N +L+GNKCD G+ + + T AQ A + + ETSAL E NVE+ FLT
Sbjct: 116 HADKNIVIMLIGNKCDLGSLRA-VPTEDAQEFAQRENLFFMETSAL---EATNVETAFLT 171
Query: 189 LAHKLY 206
+ ++Y
Sbjct: 172 ILTEIY 177
>At4g17530.1 68417.m02622 Ras-related GTP-binding protein, putative
very strong similarity to RAB1C [Lotus corniculatus var.
japonicus] GI:1370166; contains Pfam profile PF00071:
Ras family
Length = 202
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/57 (40%), Positives = 33/57 (57%)
Frame = +3
Query: 21 NAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTL 191
N ++LVGNKCD T + ++T A+ AD+ G+P ETSA NVE F+ +
Sbjct: 113 NVNKLLVGNKCDL-TSQKVVSTETAKAFADELGIPFLETSA---KNATNVEEAFMAM 165
>At3g11730.1 68416.m01439 Ras-related GTP-binding protein, putative
similar to Rab1-like small GTP-binding protein
GI:4096662 from [Petunia x hybrida]
Length = 205
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +3
Query: 30 RVLVGNKCDCGTPESRLATTYAQR-LADKYGMPLFETSALLDSECDNVESIFLTLAHKLY 206
++L+GNK D ES++ +T R LAD+ G+P ETSA + NVE FLT+A ++
Sbjct: 116 KLLIGNKNDM--VESKVVSTETGRALADELGIPFLETSA---KDSINVEQAFLTIAGEIK 170
Query: 207 SK 212
K
Sbjct: 171 KK 172
>At5g47200.1 68418.m05820 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:303750 from [Pisum
sativum]
Length = 202
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/57 (38%), Positives = 32/57 (56%)
Frame = +3
Query: 21 NAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTL 191
N ++LVGNK D T + ++T A+ AD+ G+P ETSA NVE F+ +
Sbjct: 113 NVNKLLVGNKNDL-TSQKVVSTETAKAFADELGIPFLETSA---KNATNVEEAFMAM 165
>At4g17170.1 68417.m02583 Rab2-like GTP-binding protein (RAB2)
identical to Rab2-like protein (At-RAB2) GI:1765896 from
[Arabidopsis thaliana]
Length = 211
Score = 37.9 bits (84), Expect = 0.007
Identities = 24/79 (30%), Positives = 37/79 (46%)
Frame = +3
Query: 9 HGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLT 188
H N +L+GNKCD + ++T ++ A ++G+ E SA NVE F+
Sbjct: 107 HANANMTIMLIGNKCDLAHRRA-VSTEEGEQFAKEHGLIFMEASA---KTAQNVEEAFIK 162
Query: 189 LAHKLYSKQPLRVISVAGE 245
A +Y K V V+ E
Sbjct: 163 TAATIYKKIQDGVFDVSNE 181
>At4g17160.1 68417.m02582 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:1208537 from [Glycine
max]
Length = 205
Score = 36.3 bits (80), Expect = 0.022
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = +3
Query: 9 HGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLT 188
H N +L+GNKCD + ++T ++ A ++G+ E SA NVE F+
Sbjct: 107 HASENMTTMLIGNKCDL-EDKRTVSTEEGEQFAREHGLIFMEASA---KTAHNVEEAFVE 162
Query: 189 LAHKLYSKQPLRVISVAGE 245
A +Y + V+ A E
Sbjct: 163 TAATIYKRIQDGVVDEANE 181
>At1g02130.1 68414.m00139 Ras-related protein (ARA-5) / small
GTP-binding protein, putative identical to Ras-related
protein ARA-5 SP:P28188 from [Arabidopsis thaliana]
Length = 203
Score = 36.3 bits (80), Expect = 0.022
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +3
Query: 21 NAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLA 194
N ++LVGNK D T + A+ AD+ G+P ETSA + NVE F+ ++
Sbjct: 113 NVNKLLVGNKSDL-TENRAIPYETAKAFADEIGIPFMETSA---KDATNVEQAFMAMS 166
>At1g06400.1 68414.m00677 Ras-related GTP-binding protein (ARA-2)
identical to Ras-related protein ARA-2 SP:P28185 from
[Arabidopsis thaliana]
Length = 216
Score = 35.9 bits (79), Expect = 0.029
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +3
Query: 33 VLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHKLYSK 212
+L+GNKCD + + T A+ A++ + ETSAL + +N + LT HK+ SK
Sbjct: 122 MLIGNKCDLRHLVA-VKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSK 180
Query: 213 Q 215
+
Sbjct: 181 R 181
>At4g35860.1 68417.m05093 Ras-related GTP-binding protein, putative
similar to Rab2-like GTP-binding protein GI:1765896 from
[Arabidopsis thaliana]
Length = 211
Score = 34.7 bits (76), Expect = 0.067
Identities = 24/83 (28%), Positives = 37/83 (44%)
Frame = +3
Query: 9 HGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLT 188
H N +L+GNKCD + ++ Q+ A ++G+ E SA NVE F+
Sbjct: 107 HANPNMSIMLIGNKCDLAHKRA-VSKEEGQQFAKEHGLLFLEASA---RTAQNVEEAFIE 162
Query: 189 LAHKLYSKQPLRVISVAGEVSKV 257
A K+ V V+ E S +
Sbjct: 163 TAAKILQNIQDGVFDVSNESSGI 185
>At2g43130.1 68415.m05356 Ras-related protein (ARA-4) / small
GTP-binding protein, putative identical to SP:P28187
Ras-related protein ARA-4 {Arabidopsis thaliana}
Length = 214
Score = 34.3 bits (75), Expect = 0.089
Identities = 20/68 (29%), Positives = 37/68 (54%)
Frame = +3
Query: 6 SHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFL 185
+H ++L+GNKCD + + ++ + LA+ G+ ETSAL + NV++ F
Sbjct: 112 THSDTTVAKMLIGNKCDLESIRA-VSVEEGKSLAESEGLFFMETSAL---DSTNVKTAFE 167
Query: 186 TLAHKLYS 209
+ ++YS
Sbjct: 168 MVIREIYS 175
>At2g31680.1 68415.m03867 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:289370 from [Brassica
napus]
Length = 219
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = +3
Query: 3 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 182
++H R+LVGNKCD + + ++ + LA+ G+ ETSAL + NV++ F
Sbjct: 111 KTHSDTTVARMLVGNKCDLESIRA-VSVEEGKALAETEGLFFMETSAL---DSTNVKTAF 166
Query: 183 LTLAHKLYS 209
+ +Y+
Sbjct: 167 EMVIRDIYT 175
>At1g05810.1 68414.m00608 Ras-related protein (ARA-1) (ARA) / small
GTP-binding protein, putative nearly identical to
SP:P19892 Ras-related protein ARA-1 [Arabidopsis
thaliana] (Gene 76:313-319(1989))
Length = 261
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = +3
Query: 9 HGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLT 188
H R+LVGNKCD + ++ + LA++ G+ ETSAL + NV++ F
Sbjct: 156 HSDTTVARMLVGNKCDLENIRA-VSVEEGKALAEEEGLFFVETSAL---DSTNVKTAFEM 211
Query: 189 LAHKLYS 209
+ +Y+
Sbjct: 212 VILDIYN 218
>At1g28550.1 68414.m03513 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:303742 from (Pisum
sativum)
Length = 218
Score = 31.5 bits (68), Expect = 0.62
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = +3
Query: 9 HGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLT 188
H N +LVGNK D + ++T A+ A++ ETSAL DN + LT
Sbjct: 114 HTDANIVIMLVGNKADLRHLRA-ISTEEAKAFAERENTFFMETSALEAVNVDNAFTEVLT 172
Query: 189 LAHKLYSKQPL 221
+++ SK+ L
Sbjct: 173 QIYRVVSKKAL 183
>At3g07410.1 68416.m00883 Ras-related GTP-binding family protein
contains Pfam profile: PF00071 Ras family
Length = 217
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/68 (26%), Positives = 38/68 (55%)
Frame = +3
Query: 30 RVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHKLYS 209
++LVGNKCD + ++ + LA++ G+ ETSAL + NV+ F + ++++
Sbjct: 120 QMLVGNKCDLEDIRA-VSVEEGKALAEEEGLFFMETSAL---DATNVDKAFEIVIREIFN 175
Query: 210 KQPLRVIS 233
++++
Sbjct: 176 NVSRKLLN 183
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -1
Query: 663 EHTAHLIEGRQRRSWTSAIPGQSRAAAYRQILSNNE*IYAHVDSMPPLW 517
+H H + R G +A +Y + LSNNE A DS LW
Sbjct: 527 DHHIHYYDLRNISQPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLW 575
>At3g54860.1 68416.m06078 vacuolar protein sorting protein, putative
similar to Swiss-Prot:Q63615 vacuolar protein sorting
33A (r-vps33a) [Rattus norvegicus]; contains Pfam
domain, PF00995: Sec1 family
Length = 592
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 117 GMPLFETSALLDSECDNVESIFLTLAHKLYSKQPLRVISVAGEVSKVWSHCQDRGKLVAV 296
G P +T LLD E D V + L ++ + L + + A EV Q GK + V
Sbjct: 220 GRPEVDTLILLDREVDMVTPMCSQLTYEGLIDEILHISNGAVEVDSSVMGAQQEGKKMKV 279
Query: 297 PI 302
P+
Sbjct: 280 PL 281
>At1g01200.1 68414.m00034 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GB:D12541 GI:303736 from
[Pisum sativum]
Length = 237
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +3
Query: 6 SHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFL 185
+H +A +LVGNK D + + T A A+ + E SAL NV+ F
Sbjct: 128 AHADDSAVIMLVGNKADLSVGKRAVPTEDAVEFAETQRLFFSEVSALSGG---NVDEAFF 184
Query: 186 TLAHKLYSK 212
L +++S+
Sbjct: 185 RLLEEIFSR 193
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = +3
Query: 177 IFLTLAHKLYSKQPLRVI--SVAGE--VSKVWSHCQDRGKLVAVPIRIAVYA 320
+F+ ++ +++S+ L ++ SV GE + W H R KL++ P + +V A
Sbjct: 15 VFVCVSEEIFSRGGLNLLRFSVYGEDVAEQTWIHQNPRRKLISYPKKFSVSA 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,476,043
Number of Sequences: 28952
Number of extensions: 342627
Number of successful extensions: 828
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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