Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1639X
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    27   1.4  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.3  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    26   3.3  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   4.4  

>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 170 LPTFCVFPYLFTGSLKDYYQCAHTG 96
           L  F +FP LFT  +KDY+  A  G
Sbjct: 222 LSFFSLFPCLFTILMKDYHNIAENG 246


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 179 TFFLPTFCVFPYL 141
           T+ LP FC FPYL
Sbjct: 230 TYVLPGFCTFPYL 242


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 7   RTGGRFCERNCNTLVRASVSKFRWSP 84
           RTG  F E   N L+    S F WSP
Sbjct: 220 RTGLLFHEYRPNRLIEVGFSDFEWSP 245


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 490 HVDSAYERQQPLTTRRALV*STTDRDLKRCRRNLCK*CVFLISMVQN 350
           HV   Y+    LTTR  +V    D+DL    R   + CV   + V N
Sbjct: 514 HVQMIYDNAIMLTTRVIMVKKLKDKDLTAENRRYIQLCVESATRVIN 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,930
Number of Sequences: 5004
Number of extensions: 37364
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)