Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1639X
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_49625| Best HMM Match : DPPIV_N (HMM E-Value=6.1)                   28   4.6  

>SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 810

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 173 FLPTFCVFPYLFTGSLKDY 117
           + P  C+FPY FT S+K Y
Sbjct: 573 YFPRICIFPYNFTKSVKLY 591


>SB_49625| Best HMM Match : DPPIV_N (HMM E-Value=6.1)
          Length = 708

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -3

Query: 425 HR*RLKKMPQESL*IMCVPYFYGTERTLSISHENNALILFIYLGPSLTLKYRLH 264
           HR RL K  Q SL      Y Y     L +S    A ++ ++ G +    +RLH
Sbjct: 61  HRLRLSKYTQASLIKEHTGYAYPRTHRLRLSKNTQATLIQVHTGYAYPRTHRLH 114



 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 425 HR*RLKKMPQESL*IMCVPYFYGTERTLSISHENNALILFIYLGPSLTLKYRLH 264
           HR RL K  Q SL      Y Y +   L +S      ++ ++ G +    +RLH
Sbjct: 236 HRIRLSKYTQSSLIQEHTGYAYPSTHRLHLSKNTQTSLIQVHTGYAYPSTHRLH 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,398,373
Number of Sequences: 59808
Number of extensions: 270531
Number of successful extensions: 696
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)