Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1639X
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040655-12|AAB95039.1|  507|Caenorhabditis elegans Hypothetical...    27   7.0  
Z99270-2|CAB16469.3|  477|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF040655-12|AAB95039.1|  507|Caenorhabditis elegans Hypothetical
           protein T24E12.1 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = -2

Query: 270 FTSHNNLRAMMYRMYINMNISNCEQ*KIYSNFFLAYFLCVSLSIHW*SKGLLPVRPYG*V 91
           F S+  +R  ++  ++  NI+ C    +    FL   LC S  + W  + +    PY  +
Sbjct: 273 FRSYEPIR--LFGSFLTRNINRCTPSLVNPAQFLRQTLCCSACVFW--RAVCSYGPY--L 326

Query: 90  SSRAPPEFANTSPNK 46
           S    P+ +N S N+
Sbjct: 327 SGLIMPDMSNYSVNQ 341


>Z99270-2|CAB16469.3|  477|Caenorhabditis elegans Hypothetical
           protein Y37A1A.2 protein.
          Length = 477

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -3

Query: 341 SISHENNALILF--IYLGPSLTLKYRLHPT 258
           S SH N +L++F  +Y+G  ++  Y ++PT
Sbjct: 235 SFSHLNTSLLIFTYVYMGCMVSFMYGIYPT 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,526,751
Number of Sequences: 27780
Number of extensions: 206841
Number of successful extensions: 449
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)