Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1638
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1027 - 22404169-22404807,22406148-22406360,22407062-224072...    28   5.0  

>10_08_1027 -
           22404169-22404807,22406148-22406360,22407062-22407255,
           22407422-22407566,22407801-22407875,22408222-22408380,
           22408466-22408645,22408756-22409243,22409375-22409738,
           22409811-22409943,22410023-22410153,22410247-22410354,
           22410451-22410897,22411425-22411514,22411607-22411915,
           22412209-22412320,22412488-22412699
          Length = 1332

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 357 GTERTLSISHENNALILFIYLGPSLTLKYRLH 262
           G+E T +ISH    L L  Y GP     Y LH
Sbjct: 481 GSEETTAISHARRLLALTYYAGPQFLANY-LH 511


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,292,933
Number of Sequences: 37544
Number of extensions: 230686
Number of successful extensions: 415
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)