Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1637
         (728 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q81JZ9 Cluster: Sensory box/GGDEF family protein; n=13;...    36   0.77 
UniRef50_Q5GF29 Cluster: Putative late transcription factor; n=1...    36   1.3  
UniRef50_UPI00006CF302 Cluster: hypothetical protein TTHERM_0006...    34   3.1  
UniRef50_A4TP16 Cluster: Membrane protein; n=8; Yersinia|Rep: Me...    33   7.2  

>UniRef50_Q81JZ9 Cluster: Sensory box/GGDEF family protein; n=13;
           Bacillus cereus group|Rep: Sensory box/GGDEF family
           protein - Bacillus anthracis
          Length = 909

 Score = 36.3 bits (80), Expect = 0.77
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -2

Query: 256 LTKIFFTSRALRKLLMIDSVCTIMYYDFVEHYYLQIVSRQHIIMSNYY-IYVAISVPL 86
           L +I +    L KL MI  +C I+   F   YYL I    H+  ++Y  I+V ++ P+
Sbjct: 119 LYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHVFTTSYIDIFVQLTYPM 176


>UniRef50_Q5GF29 Cluster: Putative late transcription factor; n=1;
           Diachasmimorpha longicaudata entomopoxvirus|Rep:
           Putative late transcription factor - Diachasmimorpha
           longicaudata entomopoxvirus
          Length = 213

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = -2

Query: 184 YYDFVEHYYLQIVSRQHIIMSNYYIYVAIS---VPLLTKIKQHQISL---KFLLKTRAEP 23
           + DF   YY  +    H +++  Y Y+ I     P LTK   H I L   KFLL T  + 
Sbjct: 132 FIDFFTKYYTGVAISYHTLLTRIYSYLLIETNLTPSLTKNNNHDIELIFDKFLLYTNKKR 191

Query: 22  ERAASPL 2
               +PL
Sbjct: 192 VTQGTPL 198


>UniRef50_UPI00006CF302 Cluster: hypothetical protein
           TTHERM_00066720; n=2; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00066720 - Tetrahymena
           thermophila SB210
          Length = 1267

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -2

Query: 196 CTIMYYDFVEHYYLQIVSRQHIIMSNYYIYVAISVPLLTKIKQHQIS--LKFLL 41
           C++  ++  ++ Y+ +  + H++   YY+ +A+S+P   KI Q  I   L FL+
Sbjct: 104 CSLCLFNLAQNIYILLFIKDHLVKV-YYLLIALSIPFCYKIAQSLIEARLNFLI 156


>UniRef50_A4TP16 Cluster: Membrane protein; n=8; Yersinia|Rep:
           Membrane protein - Yersinia pestis (strain Pestoides F)
          Length = 284

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 20/83 (24%), Positives = 41/83 (49%)
 Frame = -2

Query: 277 CNPMCKKLTKIFFTSRALRKLLMIDSVCTIMYYDFVEHYYLQIVSRQHIIMSNYYIYVAI 98
           C+ +C+K+TK+     A + LL+  S+    Y  F+  Y  + V+  +  + N+++ V +
Sbjct: 142 CSRICQKMTKLPKVRLAAKLLLLPTSISMYYYESFMSIYVYKTVNASY-FLDNFHVLV-L 199

Query: 97  SVPLLTKIKQHQISLKFLLKTRA 29
           S+ L           +++ KT A
Sbjct: 200 SLCLFVIFDNFDTQYEWIKKTLA 222


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,760,794
Number of Sequences: 1657284
Number of extensions: 12323261
Number of successful extensions: 25675
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25671
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)