Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1637
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    24   1.1  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   2.5  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    23   2.5  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   5.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   7.7  

>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 175 FVEHYYLQIVSRQHIIMSNYYIYVA 101
           +V+H++   +S ++ I  NYY Y A
Sbjct: 45  YVKHFHPLALSNKNAIDFNYYYYAA 69


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 343 LPSDIGYNLF 314
           LPSD+ YNLF
Sbjct: 179 LPSDVSYNLF 188


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 343 LPSDIGYNLF 314
           LPSD+ YNLF
Sbjct: 135 LPSDVSYNLF 144


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 194 YNNVLRLCRTLLFTNS 147
           Y N+L  CR +++ NS
Sbjct: 329 YYNILYFCRIMVYLNS 344


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 607 TVPNNTFSYTTFSNESVPNMS 669
           T P+NT + T+ +N + PN S
Sbjct: 424 TSPSNTNTSTSSTNSNKPNSS 444


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 388 VVSEPIQDKETNKSFLFIIL 447
           VVSEPI DK+     + + L
Sbjct: 227 VVSEPIYDKKAMSDLMIVKL 246


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,566
Number of Sequences: 336
Number of extensions: 3610
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)