Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1635
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0442 + 3495333-3496484                                           30   2.3  
11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060...    30   2.3  
06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489...    28   9.4  
03_02_0903 + 12285874-12285918,12286715-12286820,12286906-122869...    28   9.4  
02_04_0228 - 21083917-21084067,21084489-21084577,21084662-210847...    28   9.4  

>12_01_0442 + 3495333-3496484
          Length = 383

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +1

Query: 82  VTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRPR----CSQGSVKDTPKYSE 246
           VTR  R   A     A A   PP +P+S KT+ + K  +P+    C      +TP++ E
Sbjct: 203 VTRPPRTKQAPPTAPAPAPPPPPPQPASPKTKTKAKAKKPKRKRSCVHCGSTETPQWRE 261


>11_06_0562 +
           25003246-25003746,25004975-25005214,25005576-25006097,
           25006184-25007248,25007350-25007656,25007761-25008001,
           25008104-25008302,25008771-25008852,25008959-25009209,
           25010061-25010219,25010220-25010603
          Length = 1316

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 517 KDTIVFLNSTKRQCK*SPCTLHFIYEKKKMLHKNTLNYF*LRNILHVVRHDQN 359
           K  + F    K  CK   C + F YEK K+ H N    + L++I+  V    N
Sbjct: 413 KSMLNFSEMAKTDCK--MCDMSFDYEKIKLSHLNQQQLYSLKSIISAVHCRSN 463


>06_03_0947 +
           26248378-26248494,26248600-26248764,26248843-26248952,
           26249065-26249179,26249310-26249408,26249485-26249694,
           26249802-26250965
          Length = 659

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 352 ILYFGHGVLRGVCFSIKNNLEYFYATFFFFRI 447
           +LYFG+ ++    F +      FYA F+F R+
Sbjct: 620 VLYFGYMLIASAAFFVLTGTIGFYACFWFTRL 651


>03_02_0903 +
           12285874-12285918,12286715-12286820,12286906-12286961,
           12287062-12287113,12287182-12287282,12287891-12288287,
           12288852-12288937,12289061-12289078
          Length = 286

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 318 HTTLTREIFHARKLNYHSLLDVI 250
           HT  +R  F + K+NYH L ++I
Sbjct: 178 HTICSRPAFISEKINYHELTEII 200


>02_04_0228 -
           21083917-21084067,21084489-21084577,21084662-21084731,
           21084747-21084823,21084954-21085337,21085420-21085760,
           21085869-21085950,21086033-21086391,21087084-21087204,
           21087427-21087512,21088896-21088944,21089262-21089275,
           21089467-21089545
          Length = 633

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -2

Query: 369 MTKIQYSYFRL*FTEQHHTT-LTREIFHARKLNYHSLLDV-IRFRILRRIFHGPLRTS 202
           +T + ++ +   F E   T  LTR I   RK  Y+SL+D  I+ +ILR +    + TS
Sbjct: 378 VTLVTWAEYLCDFLEMTKTEELTRNIATVRK-GYYSLIDTDIKLKILRELVEEAITTS 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,985,742
Number of Sequences: 37544
Number of extensions: 409590
Number of successful extensions: 964
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)