Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1634
         (716 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4AXN1 Cluster: Polysaccharide deacetylase family prote...    33   5.3  
UniRef50_Q75EW7 Cluster: AAL039Cp; n=1; Eremothecium gossypii|Re...    33   9.3  

>UniRef50_A4AXN1 Cluster: Polysaccharide deacetylase family protein;
           n=1; Alteromonas macleodii 'Deep ecotype'|Rep:
           Polysaccharide deacetylase family protein - Alteromonas
           macleodii 'Deep ecotype'
          Length = 391

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 571 IILYSHIPSCKTAVSVDPSDTTSSHIQYITTHSTVM 464
           I+LY H+ S   A +    +T  SH++Y+ TH TV+
Sbjct: 69  ILLYHHVSSSTPASTSISPETFKSHMEYLETHHTVV 104


>UniRef50_Q75EW7 Cluster: AAL039Cp; n=1; Eremothecium gossypii|Rep:
           AAL039Cp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 283

 Score = 32.7 bits (71), Expect = 9.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 562 YSHIPSCKTAVSVDPSDTTSSHIQYITTHST 470
           Y H P C   +S DP DT + H+Q     +T
Sbjct: 156 YDHCPLCNADLSGDPEDTAAEHVQNCIARAT 186


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,200,678
Number of Sequences: 1657284
Number of extensions: 12396315
Number of successful extensions: 23509
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23500
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)