Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1634
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44983| Best HMM Match : Death (HMM E-Value=4.8e-09)                 31   0.71 
SB_50198| Best HMM Match : Frizzled (HMM E-Value=0)                    29   5.0  
SB_55306| Best HMM Match : DUF361 (HMM E-Value=3)                      28   8.7  

>SB_44983| Best HMM Match : Death (HMM E-Value=4.8e-09)
          Length = 868

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +3

Query: 42  MESKYFMQTLNLTVKIYRGVKGYHSLNFEKNITTKNFQLFERCKLN*SSIKNIELLILRR 221
           +ESKY   + +L +++Y     + S   +K +  K+FQL  R      +  N ++ +LR 
Sbjct: 581 LESKYGFVSFDLRLELYYVKFLFRSFGMKKALEHKDFQLVYRASR--IAFTNTKMSLLRD 638

Query: 222 *HHTRYSTDA*SRLR-HFQDKFEYIQATN 305
                +S D+ S ++ +FQ+K    Q  N
Sbjct: 639 LEKQFFSRDSMSAIKQYFQEKPNLNQILN 667


>SB_50198| Best HMM Match : Frizzled (HMM E-Value=0)
          Length = 654

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 564 NIINYVLSPLCLWSLV 611
           N+ NYVL+PLCL+ LV
Sbjct: 437 NLANYVLTPLCLYLLV 452


>SB_55306| Best HMM Match : DUF361 (HMM E-Value=3)
          Length = 151

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +3

Query: 27  NYQKKMESKYFMQTLNLTVKIYRG--VKGYHSLNFE-KNITTKNFQLFERCKLN*SSIKN 197
           N   KM+ K+F   +NL+ K+  G   K    LN++  N ++K  ++ ++ + N    +N
Sbjct: 74  NLSLKMDMKFFKLEINLSKKLIGGRINKKIDELNWKISNASSKTLRVLKKIETNFGQFEN 133

Query: 198 IEL 206
             L
Sbjct: 134 TSL 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,327,540
Number of Sequences: 59808
Number of extensions: 397668
Number of successful extensions: 979
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)