Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1634
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.54 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   5.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.8  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 520 PSDTTSSHIQYITTHSTVMTFLYYYIYIRMEHTEG 416
           PSD  S  IQ +   +  + FL+  ++  ME+TEG
Sbjct: 284 PSDKLSK-IQTLKLATRYIDFLFQVLHCNMENTEG 317


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 562 YSHIPSCKTAVSVDPSDTTSSHI 494
           YS +P+   + + +PS TTS+ I
Sbjct: 376 YSLVPTTTASPTTEPSTTTSTTI 398


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 650 IIR*DLFNKYSHSHQR 603
           I+  +L+ KYSH+H++
Sbjct: 61  ILEYELYIKYSHTHEK 76


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 365 FYLVLASGVIAR*TDGPHV 309
           F+LV  +G I    D PH+
Sbjct: 486 FFLVTTAGTIGILMDAPHI 504


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,044
Number of Sequences: 438
Number of extensions: 4313
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)