Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1634
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g33715.1 68418.m04018 hypothetical protein                          29   4.1  
At2g06140.1 68415.m00675 hypothetical protein                          29   4.1  
At5g06350.1 68418.m00711 expressed protein                             28   5.4  

>At5g33715.1 68418.m04018 hypothetical protein
          Length = 162

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 291 YTQTYLENVLSEIKHPSNILYDANASISTIQ 199
           Y Q YL+ V+S   HP+N  Y  N    T +
Sbjct: 74  YDQGYLQEVMSVDVHPNNYAYQTNEPYQTAE 104


>At2g06140.1 68415.m00675 hypothetical protein 
          Length = 633

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 291 YTQTYLENVLSEIKHPSNILYDANAS 214
           Y Q YL+ V+S   HP+N  Y  N S
Sbjct: 20  YDQGYLQEVISVDVHPNNYTYQTNES 45


>At5g06350.1 68418.m00711 expressed protein
          Length = 890

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -2

Query: 703 EYFEIPIHFVPLVISYGL*LDKIYLTNIHILTKDQRHNGDKT*LIILYSHIPSCKTAVSV 524
           ++F + + F P   S  L  +KI      I+ K+  +  DK+ L +  S +  C + +  
Sbjct: 172 KFFHLVVEFYPPTFS--LDAEKILENYKDIIQKNHFYVEDKSKLKVALSGLSHCLSVLPC 229

Query: 523 DPSDTTS 503
           D SDT S
Sbjct: 230 DESDTKS 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,004,082
Number of Sequences: 28952
Number of extensions: 268167
Number of successful extensions: 427
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)