Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1632
         (795 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.8  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           23   3.7  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   4.9  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   4.9  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 412 ICTYIFVFLFIYLFALLR-KYSVLIFS 489
           +CTY F + FI L  +    Y+ +IF+
Sbjct: 98  LCTYYFYYAFIILLCVYYFYYAFIIFT 124


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 595 LNPTKINGILQNNRESIIL 651
           ++P KIN + QN+R  II+
Sbjct: 7   VSPHKINVLQQNDRREIII 25


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 246 TFDFRPDPFEISLLKNR 296
           T  F P  FE+SL +NR
Sbjct: 54  TPQFEPQQFEVSLSENR 70


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 246 TFDFRPDPFEISLLKNR 296
           T  F P  FE+SL +NR
Sbjct: 74  TPQFEPQQFEVSLSENR 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,007
Number of Sequences: 336
Number of extensions: 3600
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)