Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1632
         (795 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37018-1|AAC46920.1| 1389|Drosophila melanogaster TIM protein.         30   3.2  
AF032401-1|AAB94890.1| 1398|Drosophila melanogaster circadian cl...    30   3.2  
AE014134-620|ABC65862.1| 1122|Drosophila melanogaster CG3234-PF,...    30   3.2  
AE014134-619|AAX52649.1| 1122|Drosophila melanogaster CG3234-PE,...    30   3.2  
AE014134-618|AAF51098.4| 1398|Drosophila melanogaster CG3234-PB,...    30   3.2  
AE014134-617|AAN10371.2| 1421|Drosophila melanogaster CG3234-PD,...    30   3.2  
AE014134-616|AAF51097.1| 1389|Drosophila melanogaster CG3234-PA,...    30   3.2  

>U37018-1|AAC46920.1| 1389|Drosophila melanogaster TIM protein.
          Length = 1389

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 376  TYQTRHFHSLYYYFFQDYKNNNIAKKIRFFKRDISKGSGLKSKVDLL 236
            ++      +LY+Y+ Q  KNN+I  KI   K   + G+ LK+++ ++
Sbjct: 883  SWSQEEMDTLYWYYVQSKKNNDIVGKI--VKLFSNNGNKLKTRISII 927


>AF032401-1|AAB94890.1| 1398|Drosophila melanogaster circadian clock
            protein protein.
          Length = 1398

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 376  TYQTRHFHSLYYYFFQDYKNNNIAKKIRFFKRDISKGSGLKSKVDLL 236
            ++      +LY+Y+ Q  KNN+I  KI   K   + G+ LK+++ ++
Sbjct: 892  SWSQEEMDTLYWYYVQSKKNNDIVGKI--VKLFSNNGNKLKTRISII 936


>AE014134-620|ABC65862.1| 1122|Drosophila melanogaster CG3234-PF,
            isoform F protein.
          Length = 1122

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 376  TYQTRHFHSLYYYFFQDYKNNNIAKKIRFFKRDISKGSGLKSKVDLL 236
            ++      +LY+Y+ Q  KNN+I  KI   K   + G+ LK+++ ++
Sbjct: 883  SWSQEEMDTLYWYYVQSKKNNDIVGKI--VKLFSNNGNKLKTRISII 927


>AE014134-619|AAX52649.1| 1122|Drosophila melanogaster CG3234-PE,
            isoform E protein.
          Length = 1122

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 376  TYQTRHFHSLYYYFFQDYKNNNIAKKIRFFKRDISKGSGLKSKVDLL 236
            ++      +LY+Y+ Q  KNN+I  KI   K   + G+ LK+++ ++
Sbjct: 883  SWSQEEMDTLYWYYVQSKKNNDIVGKI--VKLFSNNGNKLKTRISII 927


>AE014134-618|AAF51098.4| 1398|Drosophila melanogaster CG3234-PB,
            isoform B protein.
          Length = 1398

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 376  TYQTRHFHSLYYYFFQDYKNNNIAKKIRFFKRDISKGSGLKSKVDLL 236
            ++      +LY+Y+ Q  KNN+I  KI   K   + G+ LK+++ ++
Sbjct: 892  SWSQEEMDTLYWYYVQSKKNNDIVGKI--VKLFSNNGNKLKTRISII 936


>AE014134-617|AAN10371.2| 1421|Drosophila melanogaster CG3234-PD,
            isoform D protein.
          Length = 1421

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 376  TYQTRHFHSLYYYFFQDYKNNNIAKKIRFFKRDISKGSGLKSKVDLL 236
            ++      +LY+Y+ Q  KNN+I  KI   K   + G+ LK+++ ++
Sbjct: 915  SWSQEEMDTLYWYYVQSKKNNDIVGKI--VKLFSNNGNKLKTRISII 959


>AE014134-616|AAF51097.1| 1389|Drosophila melanogaster CG3234-PA,
            isoform A protein.
          Length = 1389

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 376  TYQTRHFHSLYYYFFQDYKNNNIAKKIRFFKRDISKGSGLKSKVDLL 236
            ++      +LY+Y+ Q  KNN+I  KI   K   + G+ LK+++ ++
Sbjct: 883  SWSQEEMDTLYWYYVQSKKNNDIVGKI--VKLFSNNGNKLKTRISII 927


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,128,362
Number of Sequences: 53049
Number of extensions: 512401
Number of successful extensions: 692
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3695805360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)