Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1632
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   7.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   7.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   10.0 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   10.0 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   10.0 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   10.0 

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 418 TYIFVF-LFIYLFALLRKYSVLIFSQFVSSI*N 513
           T +FV  +FI+ + +   + +L +S+ +SSI N
Sbjct: 217 TKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRN 249


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 524  ILNIFYIEETNCENIKT 474
            I N+FY +ET+C   KT
Sbjct: 1433 INNVFYEDETSCMLDKT 1449


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 418 TYIFVF-LFIYLFALLRKYSVLIFSQFVSSI*N 513
           T +FV  +FI+ + +   + +L +S+ +SSI N
Sbjct: 217 TKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRN 249


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 527 HILNIFYIEETNCENIKTLY 468
           H L I ++   N E IKT+Y
Sbjct: 3   HFLWIVFLALANGEEIKTIY 22


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +1

Query: 304 WLCCYFC 324
           W+ CYFC
Sbjct: 184 WILCYFC 190


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +1

Query: 304 WLCCYFC 324
           W+ CYFC
Sbjct: 217 WIMCYFC 223


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +1

Query: 304 WLCCYFC 324
           W+ CYFC
Sbjct: 270 WIMCYFC 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,045
Number of Sequences: 438
Number of extensions: 4359
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)