Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1630
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    30   0.26 
SPCC285.04 |||transthyretin |Schizosaccharomyces pombe|chr 3|||M...    27   1.8  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   4.2  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   7.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.4  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    25   9.7  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   9.7  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   9.7  

>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
 Frame = +2

Query: 245 GTMVRKRY----SHLISKQYNPQEIYVRSTDVDRTLMSAQANLAGMYPPNGTSVWNPDLM 412
           G  +R+RY      L  +  N  ++Y+R+T + R L S +   +G+YP +         M
Sbjct: 120 GEYLRERYVKQLKFLPDELNNYADVYMRATPMVRALESLEHVFSGLYPESKRK------M 173

Query: 413 WQPIPVHTVPEHDDNILAMKKSCP 484
             P+ + T    D+N+L  + +CP
Sbjct: 174 GLPV-IFTRNWSDENLLPNENNCP 196


>SPCC285.04 |||transthyretin |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 124

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -1

Query: 465 ARMLSSCSGTVCTGIGCHIKSGFHTLVPFGGYIPAKLA*ADIRVRSTSVDLTYISCGLYC 286
           A +L++ SG    G+   +     +  P   +I      A+ RV S +VDL+ +  G+Y 
Sbjct: 15  AHILNTMSGIPAAGVQVALFKLNESPTPSQQFIATTETNANGRVTSWNVDLSTVESGIYT 74

Query: 285 FEIK 274
           F  +
Sbjct: 75  FRFE 78


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 570 IFEHWHQN*ELCRYFGYLHHFV 635
           ++E    N  LCRY+G L HF+
Sbjct: 120 VYEFLDGNNLLCRYYGVLFHFL 141


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 646 ILQCTKWCRYPKYRQSS*FWCQCSKISNALVHHIYGVYSGIPLNGC 509
           +LQ   W R P   Q+   +C+  K+ N  +H IY +Y+G  ++ C
Sbjct: 285 LLQQYPWQR-PNIYQT---FCEICKMRNVPIH-IYDIYNGKNVSSC 325


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 547  YDELMHYLSSNTGTKIKSFAD-ILDIYTTLYIEEF 648
            YDELM       G   K F D I+ +Y+  Y  +F
Sbjct: 4017 YDELMQLYRDEQGNSRKPFKDYIIQLYSLKYDYDF 4051


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 499 ASENTHSVEYLNKLHKYDELMHYL 570
           +SEN+ SV    + HK+ +L+HY+
Sbjct: 57  SSENSSSVRN-TRTHKFKQLLHYI 79


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/28 (35%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +1

Query: 577 NTGTK-IKSFADILDIYTTLYIEEFNNF 657
           N G+  + SF+++ ++Y++ Y+EE+N F
Sbjct: 865 NAGSAMLPSFSNLPNLYSSSYLEEWNVF 892


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 84  SLCDETIEFAVVIYRHGDRTPVNPYP 161
           S+ DE +EF   +  H   T V+P+P
Sbjct: 286 SMKDEPVEFLGKVETHNHPTAVSPFP 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,821
Number of Sequences: 5004
Number of extensions: 70684
Number of successful extensions: 198
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)