Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1630
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0674 + 27173948-27174188,27174704-27175260,27175310-271753...    31   1.1  
10_08_0301 - 16619499-16619675,16619770-16619853,16619932-166200...    29   2.5  
08_02_0082 + 12059692-12060209,12060484-12060973                       29   3.3  
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026     29   4.4  
07_03_0383 - 17476271-17479228,17480466-17480750                       28   5.8  
06_03_1265 + 28847782-28849803                                         28   5.8  
03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693     28   5.8  

>04_04_0674 +
           27173948-27174188,27174704-27175260,27175310-27175399,
           27175475-27175714,27175801-27176022,27176124-27176433,
           27176528-27176847,27176906-27177021,27177133-27177227,
           27177331-27177407,27177520-27177615
          Length = 787

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 374 PPNGTSVWNPDLMWQPIPVHTVPEHDDNILAMKKSCPAYDKEHLKTPIQ 520
           P  G  +W   +M +       P HD++ L +   C  + KEHLK  ++
Sbjct: 254 PSVGLKIWIFYIMVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKEKLK 302


>10_08_0301 -
           16619499-16619675,16619770-16619853,16619932-16620083,
           16620296-16620391,16620473-16620627,16620791-16620856,
           16620993-16621062,16621175-16621305,16622121-16622307,
           16622410-16622485
          Length = 397

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 568 SNALVHHIYGVY---SGIPLNGCFQMLLIIGWTGLF 470
           S+ L  H  GVY   +G+   G F+M++ IGW   F
Sbjct: 269 SDVLSEHTSGVYFGWAGLSTRGIFKMVMSIGWNPYF 304


>08_02_0082 + 12059692-12060209,12060484-12060973
          Length = 335

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 341 MSAQANLAGMY-PPNGTSVWNPDLMWQPIPVHTVPEHDDNILAM 469
           MS  A LAG+     G   +N  +    +PV  + EHDD I AM
Sbjct: 1   MSTTAKLAGLLRDEQGPVAFNDAVDEDAVPVEPLTEHDDAISAM 44


>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
          Length = 961

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +2

Query: 245 GTMVRKRYSHLISKQYNPQEIYVRSTDVDRTLMSAQANLAGMYPPNGTSVWNPD-LMWQP 421
           GTM+ K      SK     E+Y    D++RT + A AN    +  +G S  NP+    QP
Sbjct: 626 GTMLPKSVDAAQSKSAFQMEVYKMPPDLNRTKLYAPAN----FRVSGASPLNPEYACGQP 681

Query: 422 IPVHTVPEHDDNILA 466
           + V      D + LA
Sbjct: 682 VRVTPTELPDPSGLA 696


>07_03_0383 - 17476271-17479228,17480466-17480750
          Length = 1080

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = -1

Query: 462 RMLSSCSGT--VCTGIGCHIKSGFHTLVPFGGYIPAKLA*ADIRVRSTSVDLTYISCGLY 289
           R++  C+G       IGCH++   H    +G    +       R+RST ++++Y+    Y
Sbjct: 338 RIVQKCNGLPMAIRRIGCHLRDVDHKEDEWGRVYSSDFCGISARIRST-INMSYLELPYY 396

Query: 288 CFEIKCEYRFRTIVPAGSAASCQ 220
              +K  + +  + P GS    Q
Sbjct: 397 ---LKRCFLYCALYPEGSVIERQ 416


>06_03_1265 + 28847782-28849803
          Length = 673

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 526 YLNKLHKYDELMHYLSSNTGTKIKSFADILD 618
           YL  L + +E +H+LS N G   +  ADI++
Sbjct: 110 YLAVLSRLEEALHFLSDNCGIASQWLADIVE 140


>03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693
          Length = 661

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
 Frame = +2

Query: 203 WTTYQYW---QEAALPAGTMVRKR-YSHLISKQYNPQEIYVRSTDVDRTLMSAQANLAG- 367
           W T Q W   ++ A     +   R +   I   + PQ++++ ST     L+S +  + G 
Sbjct: 391 WVTSQGWILVRDTASATTFLQNPRDFDDKIQLPHLPQDVHISST----CLLSCKPTMPGC 446

Query: 368 ---MYPPNGTSVWNPDLMWQPIPVHTVPEHDDNILAMKKSCPAYDKEHLKTPIQW 523
              +  P GT +W   +      V    EHD +I       P   K+H K PI W
Sbjct: 447 VVLLVEPVGTIIWYCHIGDDEKWV----EHDYDIGTQVLDPPLDGKDHEKVPICW 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,716,416
Number of Sequences: 37544
Number of extensions: 446422
Number of successful extensions: 1085
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)