Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1630
(663 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29790| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 8e-09
SB_43247| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_16495| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.039
SB_38343| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.4e-40) 32 0.48
SB_40204| Best HMM Match : KOW (HMM E-Value=0.00011) 31 0.84
SB_45570| Best HMM Match : Euplotes_phero (HMM E-Value=2.6) 30 1.9
SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_2157| Best HMM Match : ig (HMM E-Value=9e-19) 28 7.8
>SB_29790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 57.6 bits (133), Expect = 8e-09
Identities = 22/45 (48%), Positives = 32/45 (71%)
Frame = +3
Query: 120 IYRHGDRTPVNPYPTDPWKNESLWPVNFGQLTNIGKKRHYQLGQW 254
+Y HGDR+P+ YP+DP+ N WP FGQLT +G ++ Y LG++
Sbjct: 1 VYPHGDRSPIRSYPSDPYAN--YWPQGFGQLTQLGMQQEYYLGKF 43
>SB_43247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 48.0 bits (109), Expect = 7e-06
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3
Query: 120 IYRHGDRTPVNPYPTDPWKNESLWPVNFGQLTNI 221
+Y HGDR+P+ YP+DP+ N WP FGQLT +
Sbjct: 96 VYPHGDRSPIRSYPSDPYAN--YWPQGFGQLTQV 127
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +2
Query: 302 EIYVRSTDVDRTLMSAQANLAGMYPPNG 385
++Y RSTD DRT+MSAQA L G+YPP G
Sbjct: 126 QVYCRSTDKDRTIMSAQAQLNGLYPPKG 153
>SB_16495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 851
Score = 35.5 bits (78), Expect = 0.039
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 5/40 (12%)
Frame = +2
Query: 242 AGTMVRKRYS-----HLISKQYNPQEIYVRSTDVDRTLMS 346
AG +R++Y+ +L++++YN E+YVRS+D RTL S
Sbjct: 92 AGEYIRRQYNESTHLNLLTEKYNASEVYVRSSDFARTLNS 131
>SB_38343| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.4e-40)
Length = 456
Score = 31.9 bits (69), Expect = 0.48
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 263 RYSHLISKQYNPQEIYVRSTDVDRTLMSAQANLAGMYPPNGTSVWNPDLMWQPIPVH-TV 439
RY + SKQY + ST RT+ S + G++ G V +QP+ + +
Sbjct: 122 RYPSVFSKQYWNADYEFVSTATLRTVQSGNSFAYGLFEGRGP-VGRKG--FQPVAIRFSG 178
Query: 440 PEHDDNILAMKKSCPAYDK 496
P+ D +L CP YD+
Sbjct: 179 PKDHDKVLRPYSMCPRYDQ 197
>SB_40204| Best HMM Match : KOW (HMM E-Value=0.00011)
Length = 1198
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 233 PLLANIGKLSKVHGPQGFILPRVCWVGVHWGSIAMAVNYHSKFY 102
P LAN+GK+ + G + + PR WV V I + + HS+ Y
Sbjct: 745 PGLANLGKMFSMFGDKSYHRPRNTWVEVVCKYIHDSFSRHSRTY 788
>SB_45570| Best HMM Match : Euplotes_phero (HMM E-Value=2.6)
Length = 388
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 631 KWCRYPKYRQSS*F--WCQCSKISNALVHHIY 542
+WC +Y + WC C++ S +VHH++
Sbjct: 254 EWCTCTEYSEHMIHHEWCTCTEYSEHMVHHVW 285
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 631 KWCRYPKYRQSS*F--WCQCSKISNALVHHIY 542
+WC +Y + WC C++ S +VHH++
Sbjct: 269 EWCTCTEYSEHMVHHVWCTCTEYSEHMVHHVW 300
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 631 KWCRYPKYRQSS*F--WCQCSKISNALVHHIY 542
+WC +Y + WC C++ S +VHH++
Sbjct: 329 EWCTCTEYSEHMVHHVWCTCTEYSEHMVHHVW 360
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 628 WCRYPKYRQSS*F--WCQCSKISNALVHHIY 542
WC +Y + WC C++ S +VHH++
Sbjct: 285 WCTCTEYSEHMVHHVWCTCTEYSEHMVHHVW 315
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 628 WCRYPKYRQSS*F--WCQCSKISNALVHHIY 542
WC +Y + WC C++ S +VHH++
Sbjct: 315 WCTCTEYSEHMVHHEWCTCTEYSEHMVHHVW 345
>SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Frame = +3
Query: 72 FATTSLCDETIEFAVVIYRHGDRTPVNPYPTDPWKNESLWPVNFGQ-----LTNIGKKRH 236
FAT+ C I++ + R + YP DP +++G L N G+K +
Sbjct: 397 FATSCSCCAPIQYKIQKVASSARRHIENYPEDPGDEVDAEGIDYGAKALGLLRNFGRKIN 456
Query: 237 YQLGQW 254
+ W
Sbjct: 457 FAFYDW 462
>SB_2157| Best HMM Match : ig (HMM E-Value=9e-19)
Length = 603
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 239 PAGTMVRKRYSHLISKQYNPQEIYVRSTDVDRTLMSAQANLAGMY 373
PA + + H+I + + R+ +D T+M AQAN G Y
Sbjct: 193 PAPRLAWLKDDHVIGENQKGYRLAKRARGLDLTIMLAQANSGGNY 237
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,784,200
Number of Sequences: 59808
Number of extensions: 520928
Number of successful extensions: 1208
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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