Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1630
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21470.1 68417.m03105 riboflavin kinase/FAD synthetase family...    31   0.68 
At3g16740.1 68416.m02137 F-box family protein contains F-box dom...    29   2.8  
At2g26570.1 68415.m03187 expressed protein contains Pfam profile...    29   2.8  
At3g17620.1 68416.m02251 F-box family protein contains Pfam prof...    28   6.4  
At1g69900.1 68414.m08044 expressed protein  contains Pfam profil...    28   6.4  

>At4g21470.1 68417.m03105 riboflavin kinase/FAD synthetase family
           protein contains Pfam profiles PF01687: Riboflavin
           kinase / FAD synthetase, PF00702: haloacid
           dehalogenase-like hydrolase
          Length = 379

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 568 SNALVHHIYGVY---SGIPLNGCFQMLLIIGWTGLFHCKNVVI 449
           ++ LV H  GVY   +G+   G F+M++ IGW   F+ K   I
Sbjct: 269 ADELVEHPSGVYFGWAGLAKRGVFKMVMSIGWNPYFNNKEKTI 311


>At3g16740.1 68416.m02137 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 391

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = -2

Query: 656 KLLNSSMYKVV*ISKISAKLLILVPVFEDK*CISSSYLWSLFRYSTEWVFSDAPYHRLDR 477
           KL++  +   V ISKI     +L+ + +D   IS   +W+ +   T W+     YHRLDR
Sbjct: 90  KLISLDVEDHVDISKIFHCGGLLLCITKD---ISRLVVWNPYSGQTRWIKPRNSYHRLDR 146


>At2g26570.1 68415.m03187 expressed protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827);
           weak similarity to merozoite surface protein 3 alpha
           (GI:27596802) [Plasmodium vivax]
          Length = 807

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -2

Query: 446 VQELYVQVLAATSNLDSTH*FHLEDTFQLNWPEQT*ECDQHPWILHISLVDCTALKLSAN 267
           V+EL ++++A   +L+S H  HLE   Q        + D H W   +   +    +L+  
Sbjct: 343 VEELTIELIATKESLESAHASHLEAEEQRIGAAMARDQDTHRWEKELKQAEEELQRLNQQ 402

Query: 266 IAS 258
           I S
Sbjct: 403 IHS 405


>At3g17620.1 68416.m02251 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 398

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = -2

Query: 563 CISSSY----LWSLFRYSTEWVFSDAPYHRLD 480
           CIS  Y    +W+ +R  T W+   +P HR+D
Sbjct: 114 CISKDYTRVVVWNPYRSQTLWLKPSSPDHRMD 145


>At1g69900.1 68414.m08044 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 397

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 98  NYRICCGNLPPWR*NPSEPLPNR 166
           NY    G +PPWR + +  LPNR
Sbjct: 355 NYLRANGGVPPWRNSVTHDLPNR 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,027,178
Number of Sequences: 28952
Number of extensions: 365965
Number of successful extensions: 919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)