Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1629
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    29   0.68 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   4.8  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    26   4.8  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   6.3  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   6.3  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   8.3  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    25   8.3  

>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +1

Query: 205 SAEYKLEGDVVKVKNVQSSTASRSI*KGRPSSPTTPI--KPQS*QSLLSLEKY 357
           SA  K+  D +  KN  +S  SR I    PSSP+TPI   P+  + +LSL++Y
Sbjct: 518 SALAKIGHDALNRKN-HASLPSRRIVYKPPSSPSTPISMNPRP-KGILSLQQY 568


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 533 SKEIDSSKLVHTDFSEEACKFTSSSVITEHGKH 631
           +KEI+SSK   TD   E   FT  +  + +  H
Sbjct: 96  AKEIESSKNQETDAKSEQAPFTEDASSSNYAHH 128


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 295 SSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTIITTPSLTTANTMTRKSL 447
           SS   P  P      ++      ++   S+RL + T+P+L   N   RKSL
Sbjct: 147 SSTMIPTTPSKNPEPVAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSL 197


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 381  LATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTASIISSRNTPKR*TLRNL 560
            L+T + ++ I+YN  +  K +   + VW  S     E  A   +I+  +   K   L NL
Sbjct: 1386 LSTTFYSFLISYNDSFIKKHEEKVLTVWFESLGALDEDHAAQFTILLLQKNLKNPILLNL 1445

Query: 561  CIPI 572
             I +
Sbjct: 1446 PISV 1449


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +1

Query: 139  YQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVQSSTASRSI*KGRPSSPTTPIK 318
            Y G+  E+S   N +      ++   K     V   NV   T SR + K   + P+ P  
Sbjct: 1187 YHGMQVEVSMVLNVTNPQFVVNTRAGKNRKTNVSANNVSQGTDSRLVTKPTSTFPSPPSP 1246

Query: 319  PQS 327
            P S
Sbjct: 1247 PSS 1249


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 609 TLELVNLQASSEKSVCTSFEESISLECSLMKLSTQF*RRLQAS 481
           TL  VN   +S + + T   ESI   CSL++++ +  R+ + S
Sbjct: 143 TLSSVNQNFNSRQLLATIVPESIQNGCSLLRITKKKVRQRKVS 185


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 453 LDETFSCHRICSCKRWRSYYSQSP 382
           L E    H+ C+ K W   YS+ P
Sbjct: 439 LVEVILAHKNCTLKEWNQLYSEIP 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,454
Number of Sequences: 5004
Number of extensions: 49718
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)