Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1629
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012...    41   0.001
02_04_0592 - 24171698-24172285                                         34   0.100
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636...    31   0.70 
03_01_0608 + 4471738-4472115                                           29   2.8  
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673...    28   8.7  
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209...    28   8.7  
02_05_0212 - 26808484-26809368                                         28   8.7  

>08_02_0805 +
           21400345-21400701,21400797-21400975,21401223-21401271,
           21401310-21401390,21401988-21402605
          Length = 427

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +1

Query: 106 LKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKN 249
           +K V N +L  Y G WYEI+ FP+  + ++G  + A Y L GD  VKV N
Sbjct: 1   MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLN 50


>02_04_0592 - 24171698-24172285
          Length = 195

 Score = 34.3 bits (75), Expect = 0.100
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = +1

Query: 103 ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKL--EGDVVKVKN-VQSSTAS 270
           E+  V   ++  Y G WYEI+  PN  + ++G+ + A Y L  +G  V V N   +S+  
Sbjct: 13  EMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDVLNETWTSSGK 72

Query: 271 RSI*KG 288
           R   KG
Sbjct: 73  RDYIKG 78


>04_03_0673 -
           18562497-18563010,18563080-18563471,18563553-18563649,
           18563977-18564149,18564349-18564485,18564806-18564872
          Length = 459

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 115 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGD 231
           V NFN+  + G WY IS   N +     C   E+++EGD
Sbjct: 202 VKNFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239


>03_01_0608 + 4471738-4472115
          Length = 125

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 498 RRLQASCF*RGSRRTLDETFSCHRICSCKR 409
           +RL+A+   RG  ++ DE F C R+C+ KR
Sbjct: 32  QRLKAA---RGREKSSDEVFVCERVCTSKR 58


>11_06_0684 -
           26264540-26264661,26264926-26264989,26267168-26267371,
           26268322-26268456,26269174-26269492,26269581-26269631,
           26269721-26269864,26270080-26270160,26270252-26270302,
           26270392-26270535,26270750-26270833,26270912-26271055,
           26271147-26271196
          Length = 530

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 137 LTKASGMKSRNFPTNLRRTANALQLNTNWKVTW*RSRTCNHR 262
           + K  G +SRN+  N+R   +AL     +++ W R    N R
Sbjct: 340 MCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIRKHQGNLR 381


>11_06_0275 -
           21818071-21818192,21818457-21818520,21820699-21820902,
           21821852-21821986,21822704-21823022,21823111-21823161,
           21823251-21823394,21823610-21823690,21823782-21823832,
           21823922-21824065,21824280-21824363,21824442-21824585,
           21824677-21824726
          Length = 530

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 137 LTKASGMKSRNFPTNLRRTANALQLNTNWKVTW*RSRTCNHR 262
           + K  G +SRN+  N+R   +AL     +++ W R    N R
Sbjct: 340 MCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIRKHQGNLR 381


>02_05_0212 - 26808484-26809368
          Length = 294

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 226 GDVVKVKNVQSSTASRSI*KGRPSSPTTPIKPQ 324
           GD    KNV SS++S S  K   SS  +P KP+
Sbjct: 44  GDAHNHKNVSSSSSSSSKAKPAASSKVSPAKPR 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,391,511
Number of Sequences: 37544
Number of extensions: 310481
Number of successful extensions: 916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)