Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1629
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)                  36   0.044
SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.72 
SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)                    30   1.7  
SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)              30   1.7  
SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)                    28   6.7  
SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)                    28   6.7  
SB_26488| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_32586| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
          Length = 418

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 91  GTCPELKPVNNFNLTAYQGIWYEI-SKFPNES--EKNGKCSSAEYKLEGD 231
           G C  +  V   N+T+Y G WY++ S F  E   E+N  C +A+Y L  D
Sbjct: 233 GPCQGIDTVPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKD 282


>SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +1

Query: 181 SEKNGKCSSAEYKLEGDVVKVKNVQSSTASRSI*KGRPSSPTTPIKPQS*QSLLSLEKYH 360
           S+ +GK  S   +LE  +V++K  Q++ A++ +            K  S QSL + +   
Sbjct: 529 SDSDGKAKSRIKELEAKIVELKKKQANAANKRLKDALQKQREAADKRMSQQSLQNKQSEG 588

Query: 361 AMDQFKSW 384
            + + KSW
Sbjct: 589 MLRRMKSW 596


>SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)
          Length = 1013

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 345 FGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTASIISS 524
           FGE  ++GS+ + A    ++A A    Y D+K   Q   W++S+        K  ++ SS
Sbjct: 504 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSKQSPSGAFPKVGTVHSS 563


>SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)
          Length = 264

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 345 FGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTASIISS 524
           FGE  ++GS+ + A    ++A A    Y D+K   Q   W++S+        K  ++ SS
Sbjct: 202 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSKQSPSGAFPKVGTVHSS 261


>SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)
          Length = 591

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 235 PRHLPVCIQLKSICRSSQIRWEISRFHTRCLGKLSS*SCSPVSARGRCLRE*LQQSP 65
           PR+   C++L + C SSQ + ++   H + L +L+       S+R       LQ  P
Sbjct: 320 PRYHIACLKLWTSCYSSQFKQDLLAKHAKLLLRLAEKDSLDTSSRPAFCTASLQHQP 376


>SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)
          Length = 395

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
 Frame = +3

Query: 288 TAKLTDDANKAAKLTVTFK--FGEISRDGSV-QVLATDYNNYAIAYNCKYDDKKKSHQVF 458
           T ++T+  +      + FK    EIS+ G+V +V+ATD  +  I  + K +  +  HQ  
Sbjct: 129 TVQVTEAGSSNGMERLGFKNCMDEISKSGNVVKVVATD-RHVGIRSDLKKNHPECQHQFD 187

Query: 459 VWILSRN--KKLEGDAK 503
           VW ++++  KKL   AK
Sbjct: 188 VWHMAKSVTKKLTEAAK 204


>SB_26488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/62 (29%), Positives = 36/62 (58%)
 Frame = +1

Query: 457 SSGSSLETRSLKATLKLRR*FHQGTLQRDRLFETCAYRFFRGSLQIYQLQRDNRTRETLR 636
           +S S+   R+  A  +L+  + Q T+++DRL    +  +FR S  +  L R  +T+E++R
Sbjct: 63  TSSSATSKRTFSAIKRLKN-YMQSTMRQDRLKAALSPVYFRRS--VGNLNR-QKTKESIR 118

Query: 637 LK 642
           ++
Sbjct: 119 IR 120


>SB_32586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = +1

Query: 448 IKCSSGSSLETR-SLKATLKLRR*FHQGTLQRDRLFETCAYRFFRGSLQIYQLQRDNRTR 624
           IK  S  +L +R   KA +K R  +H+   + +   +   YRFFR      +++R+ R  
Sbjct: 129 IKIKSRQNLSSRLRSKALMKTRDNWHKKARKSNDKLDRNGYRFFR-----QEVKRELRLA 183

Query: 625 ETLRLKRYLKHC-GESN 672
           E   ++  L  C G SN
Sbjct: 184 EKDHIRSELNKCSGNSN 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,908,108
Number of Sequences: 59808
Number of extensions: 372366
Number of successful extensions: 1135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)