Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1629
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58070.1 68418.m07267 lipocalin, putative similar to temperat...    40   0.001
At5g14890.1 68418.m01746 NHL repeat-containing protein contains ...    29   2.4  
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu...    29   2.4  
At5g64816.2 68418.m08154 expressed protein                             29   4.1  
At5g64816.1 68418.m08153 expressed protein                             29   4.1  
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s...    28   5.5  
At5g27870.1 68418.m03343 pectinesterase family protein similar t...    28   5.5  
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    28   5.5  
At1g76750.1 68414.m08932 hypothetical protein                          28   5.5  
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative...    28   7.2  
At1g59560.1 68414.m06698 expressed protein contains similarity t...    28   7.2  
At3g05150.1 68416.m00559 sugar transporter family protein simila...    27   9.6  
At1g53840.1 68414.m06128 pectinesterase family protein contains ...    27   9.6  

>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
           stress-induced lipocalin [Triticum aestivum] GI:18650668
          Length = 186

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 103 ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVQSSTASRS 276
           E++ V   N+  Y G WYEI+ FP+  + KNG  + A Y L  D  + V N   S   R 
Sbjct: 6   EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65

Query: 277 I*KG 288
             +G
Sbjct: 66  FIEG 69


>At5g14890.1 68418.m01746 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 754

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 382 WRLTIITTPSLTTANTMTRKSLIKCSSGSSLET 480
           W L   TT + TT + ++ +S++K  SG ++ET
Sbjct: 50  WSLQTSTTTTTTTKSGVSSRSMVKYESGYNMET 82


>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
           putative (AVDE1) similar to EST gb|N37612
          Length = 462

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 115 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNV 252
           V NFN++ + G WY I+   N +     C   E+  EGD   V N+
Sbjct: 204 VQNFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGDNKLVGNI 248


>At5g64816.2 68418.m08154 expressed protein
          Length = 130

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 471 RGSRRTLDETFSCHRICSCKR 409
           RG  ++ DE F C R+C+ KR
Sbjct: 38  RGREKSSDEIFVCERVCTSKR 58


>At5g64816.1 68418.m08153 expressed protein
          Length = 130

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 471 RGSRRTLDETFSCHRICSCKR 409
           RG  ++ DE F C R+C+ KR
Sbjct: 38  RGREKSSDEIFVCERVCTSKR 58


>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
           similar to SP|P04051 DNA-directed RNA polymerase III
           largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
           contains InterPro accession IPR000722: RNA polymerase,
           alpha subunit
          Length = 1328

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 276 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIA 413
           Y   +  ++    KA      F  G  ++DG   +L  DYN++A A
Sbjct: 609 YFRNSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAA 654


>At5g27870.1 68418.m03343 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Salix gilgiana
           GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
           vulgaris SP|Q43111; contains Pfam profile PF01095
           pectinesterase
          Length = 732

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
 Frame = +3

Query: 234 GEGQERAIIDGVKKYIEG-------TAKLTDDANKAAKLTVTFKFGEISRDG-SVQVLAT 389
           G+G ++ +I G K Y +G       T  +  D   A  +      G I     +++VLA 
Sbjct: 307 GDGPDKTVISGSKSYKDGITTYKTATVAIVGDHFIAKNIAFENTAGAIKHQAVAIRVLAD 366

Query: 390 DYNNYAIAYNCKYD 431
           +    +I YNCK+D
Sbjct: 367 E----SIFYNCKFD 376


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
           to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +1

Query: 190 NGKCSSAEYKLEGDVVKVKNVQ---SSTASRSI 279
           N K SSAEY  + +VVK  NV+   SST S S+
Sbjct: 234 NRKSSSAEYSSQKEVVKKTNVEGPKSSTPSNSM 266


>At1g76750.1 68414.m08932 hypothetical protein
          Length = 158

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 394 IITTPSLTTANTMTRKSLIKCSSGSSLETRSLKATLKL 507
           I+T   +  ++T+T + L+K S G+S  T SL   LKL
Sbjct: 13  IVTLMLMVASSTVTARPLMKPSMGTSSPTTSLVYRLKL 50


>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 345

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 160 ISKFPNESEKNGKCSSAEYKLEG--DVVKVKNVQ-SSTASRSI*KGRPSSPTTPI 315
           +S FP ES+ + K ++ E+KL G  + V VKN+  S      I  G+P   T  +
Sbjct: 14  VSGFPKESDFDFKTTTVEFKLPGGSNSVLVKNLYLSCDPYMRIRMGKPDPSTAAL 68


>At1g59560.1 68414.m06698 expressed protein contains similarity to
           apoptosis inhibitors
          Length = 338

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 182 LRRTANALQLNTNWKVTW*RSRTCNHRRRQEV--YRRDG 292
           L+RTA    L  NW+ +W R+ T      +EV  Y  DG
Sbjct: 78  LKRTAEQQVLRRNWRFSWVRNSTLMQPMTKEVPWYLDDG 116


>At3g05150.1 68416.m00559 sugar transporter family protein similar
           to sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 470

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 161 SRNFPTNLRRTANALQLNTNWKVTW*RSRTCN 256
           S  FP NL+ TA  L    NW  +W  S T N
Sbjct: 394 SEIFPINLKGTAGGLVTVVNWLSSWLVSFTFN 425


>At1g53840.1 68414.m06128 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 586

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +3

Query: 234 GEGQERAIIDGVKKYIEGTAKL-TDDANKAAKLTVTFKFGEISRDGSVQVLATDY---NN 401
           G+G+ + II G K +++GT    T       K  +    G I+  G+ +  A  +   ++
Sbjct: 335 GDGKGKTIISGSKNFVDGTPTYETATFAIQGKGFIMKDIGIINTAGAAKHQAVAFRSGSD 394

Query: 402 YAIAYNCKYD 431
           +++ Y C +D
Sbjct: 395 FSVYYQCSFD 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,504,697
Number of Sequences: 28952
Number of extensions: 259982
Number of successful extensions: 729
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)