Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1628
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   4.5  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   4.5  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   6.0  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   7.9  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   7.9  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +2

Query: 155 LIEFRLCKHRIFLENHFKEKLNIQNLFVCVKCH 253
           ++E    K  I +++  K + + Q + +C++CH
Sbjct: 207 ILENLWAKKLIVVKDKKKSRSDEQTIDICMRCH 239


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -2

Query: 714 HYRMNHTFSHLCNFAV-YLL--CVLLALSRLQ 628
           HY +N TF HL N  V Y L   ++  +S LQ
Sbjct: 499 HYYVNVTFPHLFNGLVDYSLWKALIFQISNLQ 530


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -2

Query: 594 WLRSSPQYLHILLFLQDD 541
           WL+++P++L   L+  D+
Sbjct: 428 WLKNNPEFLDAFLYWVDE 445


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 543 HPEEIKVCEGIEDCFGAKLKTTYLSRTELEAERELAKRK 659
           H  E++  +G  +  G + +T Y S   +E ERE  + K
Sbjct: 72  HEPEMERPKGASN--GKRARTAYTSSQLVELEREFHRSK 108


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 543 HPEEIKVCEGIEDCFGAKLKTTYLSRTELEAERELAKRK 659
           H  E++  +G  +  G + +T Y S   +E ERE  + K
Sbjct: 92  HEPEMERPKGASN--GKRARTAYTSSQLVELEREFHRSK 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,730
Number of Sequences: 336
Number of extensions: 3063
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)